RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 G3V3Y1 287 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 J3QR06 171 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 J3QT63 122 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 K7ERU9 68 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 M0R1X1 148 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 SLC17A3O00476 420 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ISLRO14498 428 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 HSPB6O14558 160 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 RBFOX2O43251 390 aaKnown RBP eCLIP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CD5LO43866 347 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZIC3O60481 467 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CA2P00918 260 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 C3orf79P0CE67 100 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 STAG3L2P0CL84 134 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 STAG3L3P0CL85 134 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ARL14EPLP0DKL9 152 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 PSG1P11464 419 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 LIFP15018 202 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 EGR1P18146 543 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 PMCHP20382 165 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 USF1P22415 310 aaPredicted RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 NPY1RP25929 384 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CD27P26842 260 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 GCHFRP30047 84 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 G6PCP35575 357 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 REG1BP48304 166 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 GNG4P50150 75 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF83P51522 516 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 GPM6AP51674 278 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 EDDM3BP56851 147 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 MLF1P58340 268 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 BPIFB3P59826 476 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ARF6P62330 175 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CX3CL1P78423 397 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ARF1P84077 181 aaKnown RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 RHOGP84095 191 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TFF3Q07654 80 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 KLF5Q13887 457 aaPredicted RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 RTL8BQ17RB0 113 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CEACAM16Q2WEN9 425 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 DEFB133Q30KQ1 61 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 HLA-BQ31612 363 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF718Q3SXZ3 478 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TIGITQ495A1 244 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 KRTCAP3Q53RY4 240 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OCIAD2Q56VL3 154 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 PRAMEF20Q5VT98 475 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR4A47Q6IF82 309 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 PRR27Q6MZM9 219 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 Q6P435 159 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 UNQ5815/PRO19632Q6UWF5 114 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 C12orf54Q6X4T0 127 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF497Q6ZNH5 498 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM136Q6ZRR5 245 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 SHISA6Q6ZSJ9 500 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 VASH2Q86V25 355 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 NIT1Q86X76 327 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 Q8IYB0 196 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR8I2Q8N0Y5 310 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 DRAM1Q8N682 238 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF114Q8NC26 417 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR2M7Q8NG81 312 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR52L2PQ8NGH6 319 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR1K1Q8NGR3 316 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR52E5Q8NH55 327 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF596Q8TC21 504 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TSKUQ8WUA8 353 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 FAM216AQ8WUB2 273 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 IL1F10Q8WWZ1 152 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 C11orf52Q96A22 123 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM45BQ96B21 275 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF501Q96CX3 271 aaPredicted RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 GRAMD2BQ96HH9 432 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ALKBH3Q96Q83 286 aaPredicted RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 RPP25Q9BUL9 199 aaKnown RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 LINC00470Q9BZP3 86 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 COMMD5Q9GZQ3 224 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CSTL1Q9H114 145 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR2D2Q9H210 308 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 MS4A6AQ9H2W1 248 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CST9LQ9H4G1 147 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 ST20Q9HBF5 79 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 SEPSECSQ9HD40 501 aaKnown RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM167BQ9NRX6 74 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 FGF21Q9NSA1 209 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 C1RLQ9NZP8 487 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 OR1A1Q9P1Q5 309 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 SLC25A10Q9UBX3 287 aaPredicted RBP2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CLN8Q9UBY8 286 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 IL19Q9UHD0 177 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 CD207Q9UJ71 328 aa2.37□□□□□ -2.03
SLIRP-208ENST00000556956 SRCAPQ6ZRS2 3230 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 NOTCH3Q9UM47 2321 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 TP53BP1Q12888 1972 aaPredicted RBP2.36□□□□□ -2.03
SLIRP-208ENST00000556956 LOC105371242A0A075B767 164 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 TRAV38-1A0A0B4J264 116 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 TRAV34A0A0B4J273 112 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 A0A1W2PR77 199 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 SMIM27A0A1W2PRY6 76 aa2.36□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM30CPA0ZSE6 113 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms