RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PPP1R1AQ13522 171 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 TTC9CQ8N5M4 171 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 OR1L8Q8NGR8 309 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 RRNAD1Q96FB5 475 aaKnown RBP13.59□□□□□ -0.23
SHMT2-225ENST00000556798 UBE2E2Q96LR5 201 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM56Q96MV1 263 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 SLA2Q9H6Q3 261 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM14BQ9NUH8 114 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 TMEM56-RWDD3S4R434 201 aa13.59□□□□□ -0.23
SHMT2-225ENST00000556798 IGLC7A0M8Q6 106 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 H3BUA1 57 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 IGHV3-11P01762 117 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 TRAPPC2P0DI81 140 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 TRAPPC2BP0DI82 140 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 ANXA7P20073 488 aaKnown RBP13.58□□□□□ -0.24
SHMT2-225ENST00000556798 ETV3LQ6ZN32 361 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 SLC25A42Q86VD7 318 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 SLC35G3Q8N808 338 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 C4orf3Q8WVX3 66 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 ALX4Q9H161 411 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-225ENST00000556798 ZNF257Q9Y2Q1 563 aa13.58□□□□□ -0.24
SHMT2-225ENST00000556798 A0A0B4J293 547 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 NPIPB5A8MRT5 1133 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 SFT2D2O95562 160 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 PF4P02776 101 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 PSMB6P28072 239 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 ASAH1Q13510 395 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 ANKRD55Q3KP44 614 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 SPINK9Q5DT21 86 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 Q6ZRM9 215 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 OR5B3Q8NH48 314 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 RAX2Q96IS3 184 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 C20orf85Q9H1P6 137 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 NDUFA4L2Q9NRX3 87 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 FKBP11Q9NYL4 201 aa13.57□□□□□ -0.24
SHMT2-225ENST00000556798 MGAM2Q2M2H8 2515 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 TRAV6A0A075B6T7 132 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 CTRB1P17538 263 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 SLC6A1P30531 599 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 MECP2P51608 486 aaKnown RBP13.56□□□□□ -0.24
SHMT2-225ENST00000556798 WT1-ASQ06250 92 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 CTRB2Q6GPI1 263 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 LYZL2Q7Z4W2 148 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 LGI3Q8N145 548 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 IL22RA2Q969J5 263 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 LSM10Q969L4 123 aaKnown RBP13.56□□□□□ -0.24
SHMT2-225ENST00000556798 GPR146Q96CH1 333 aa13.56□□□□□ -0.24
SHMT2-225ENST00000556798 ST8SIA3O43173 380 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 OR2J3O76001 311 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 HLA-AP01891 365 aaKnown RBP13.55□□□□□ -0.24
SHMT2-225ENST00000556798 TCRBP04435 133 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 CRYGCP07315 174 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 OR13C7P0DN81 318 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 UBE2MP61081 183 aaKnown RBP13.55□□□□□ -0.24
SHMT2-225ENST00000556798 SRPXP78539 464 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 RHOGP84095 191 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 THOC7Q6I9Y2 204 aaKnown RBP13.55□□□□□ -0.24
SHMT2-225ENST00000556798 MZT2BQ6NZ67 158 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 ZNF429Q86V71 674 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 FAM219AQ8IW50 185 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 SRSF8Q9BRL6 282 aaKnown RBP13.55□□□□□ -0.24
SHMT2-225ENST00000556798 NUDT15Q9NV35 164 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 CACNG5Q9UF02 275 aa13.55□□□□□ -0.24
SHMT2-225ENST00000556798 A0A0B4J2A0 478 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 C13orf42A0A1B0GVH6 325 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 FAM240BA0A1B0GVZ2 78 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 C9orf170A2RU37 121 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 I3L521 148 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 CCL24O00175 119 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 BRI3O95415 125 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 LGALS1P09382 135 aaKnown RBP13.54□□□□□ -0.24
SHMT2-225ENST00000556798 OR4E1P0C645 316 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 DEFA4P12838 97 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 HSPE1P61604 102 aaKnown RBP13.54□□□□□ -0.24
SHMT2-225ENST00000556798 PRCDQ00LT1 54 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 DHRS2Q13268 280 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 OR11H1Q8NG94 326 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 SHPKQ9UHJ6 478 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 NBEAL1Q6ZS30 2694 aa13.54□□□□□ -0.24
SHMT2-225ENST00000556798 TRBV9A0A0B4J1U6 114 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 NXPH3O95157 252 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 IFNA17P01571 189 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 RAB25P57735 213 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 C4orf46Q504U0 113 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 NMSQ5H8A3 153 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 MRPL41Q8IXM3 137 aaKnown RBP13.53□□□□□ -0.24
SHMT2-225ENST00000556798 FANCD2OSQ96PS1 177 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 P2RX4Q99571 388 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 PDCD10Q9BUL8 212 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 PLEKHA3Q9HB20 300 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 DMRT1Q9Y5R6 373 aa13.53□□□□□ -0.24
SHMT2-225ENST00000556798 IGHV4OR15-8A0A075B7B6 117 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 A0A087WW49 117 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 A0A0G2JLM5 398 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 FAM223BA6NKX1 122 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 NDUFB8O95169 186 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 DHFRP00374 187 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 MYCNOSP40205 109 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 RUNX1Q01196 453 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 HSD17B13Q7Z5P4 300 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms