RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 LYNX1G3V0Z9 82 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 SLC25A17O43808 307 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 LYNX1P0DP58 116 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 AMTP48728 403 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 UBE2G1P62253 170 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 KRTAP27-1Q3LI81 207 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM108Q6UXF1 575 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 TREML4Q6UXN2 200 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 KIR3DL3Q8N743 410 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 SIGLECL1Q8N7X8 197 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF114Q8NC26 417 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 OR1B1Q8NGR6 318 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ANAPC16Q96DE5 110 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 STARD4Q96DR4 205 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 TBX15Q96SF7 602 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 EGLN1Q9GZT9 426 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 RNASE7Q9H1E1 156 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 PARD6AQ9NPB6 346 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 DMRT1Q9Y5R6 373 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 hADV38S2A0JD32 116 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF883P0CG24 379 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 RAB7AP51149 207 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF134P52741 427 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 HSPE1P61604 102 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 CYB5R2Q6BCY4 276 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 OCC1Q8TAD7 63 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 C5orf30Q96GV9 206 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 SFRP2Q96HF1 295 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 S4R3C0 116 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF891A8MT65 544 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM250H0YL14 139 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 MKRN2OSH3BPM6 223 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 NDUFB3O43676 98 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 PDE6DO43924 150 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ERVK11-1P61568 191 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ATOH7Q8N100 152 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 OR9G1Q8NH87 305 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 OR2T6Q8NHC8 308 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 NABP2Q9BQ15 211 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 HSPB9Q9BQS6 159 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 HES4Q9HCC6 221 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 KCNIP2Q9NS61 270 aa10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 ZMAT5Q9UDW3 170 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-211ENST00000556726 EXPH5Q8NEV8 1989 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TGOLN2O43493 480 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF253O75346 499 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 AMBPP02760 352 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 IGKV1-16P04430 117 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 OR4A8P0C604 315 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TDGF1P13385 188 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 GCHFRP30047 84 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 GNB2P62879 340 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TNXAQ16473 311 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 FAM90A1Q86YD7 464 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF439Q8NDP4 499 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 C22orf15Q8WYQ4 148 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 FAM208BQ5VWN6 2430 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 MOSP00540 346 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 PAX6P26367 422 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM68Q96MH6 324 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TRAV5A0A0B4J249 113 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TNFRSF1AP19438 455 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TAS2R45P59539 299 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 PAX5Q02548 391 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 CT45A1Q5HYN5 189 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM183AQ8IXX5 376 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 CT45A3Q8NHU0 189 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 TXN2Q99757 166 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 JPT1Q9UK76 154 aa10.05□□□□□ -0.8
CCDC88C-211ENST00000556726 AHRRA9YTQ3 701 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 MMP23AO75900 390 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 LINC00869P0C866 280 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 NUBP1P53384 320 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 PKIAP61925 76 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 Q8NFD4 153 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 NPIPB3Q92617 1050 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 DAZAP1Q96EP5 407 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 KLF2Q9Y5W3 355 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 RBP4P02753 201 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 SLC25A5P05141 298 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 IQCJQ1A5X6 159 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 C11orf53Q8IXP5 236 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 OR5AU1Q8NGC0 362 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 OR5B3Q8NH48 314 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 FLYWCH2Q96CP2 140 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 MGST2Q99735 147 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 SLC45A2Q9UMX9 530 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 WDR83OSQ9Y284 106 aa10.04□□□□□ -0.8
CCDC88C-211ENST00000556726 TRBV6-6A0A0A6YYG2 114 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF137PP52743 207 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 CENPWQ5EE01 88 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 UNQ6494/PRO21346Q6UXR6 183 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 GGTLC1Q9BX51 225 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 C19orf67A6NJJ6 358 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 HIST1H1BP16401 226 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 TIMP3P35625 211 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 SRSF7Q16629 238 aaKnown RBP eCLIP10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 RPEL1Q2QD12 228 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF474Q6S9Z5 364 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms