RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 BRD3OSQ6XYD6 125 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SMIM8Q96KF7 97 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 B4DSR2 109 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 PPP1R17O96001 155 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 PRR30Q53SZ7 412 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 NCMAPQ5T1S8 102 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 TMEM219Q86XT9 240 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 CBLN2Q8IUK8 224 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 C3orf56Q8N813 242 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 TEX45Q8NA69 505 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 COL25A1Q9BXS0 654 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 ERVH48-1M5A8F1 160 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 TIMM23O14925 209 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SPTBP11277 2137 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 ADIPOQQ15848 244 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 ARL6IP6Q8N6S5 226 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 GLMPQ8WWB7 406 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 MAP1LC3AQ9H492 121 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 TNFRSF18Q9Y5U5 241 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 NCOR1O75376 2440 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 H3BVH4 76 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 IL6RP08887 468 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SAA1P0DJI8 122 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-220ENST00000555612 SMIM12Q96EX1 92 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 CACNA1BQ00975 2339 aa6.89□□□□□ -1.31
SYNE2-220ENST00000555612 PQLC2LA1A4F0 135 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 ASIPP42127 132 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 SUMO2P61956 95 aaKnown RBP6.88□□□□□ -1.31
SYNE2-220ENST00000555612 VMO1Q7Z5L0 202 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 TMEM101Q96IK0 257 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 GEMIN7Q9H840 131 aaKnown RBP6.88□□□□□ -1.31
SYNE2-220ENST00000555612 INTS1Q8N201 2190 aaKnown RBP6.88□□□□□ -1.31
SYNE2-220ENST00000555612 IFITM10A6NMD0 228 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 TBX6O95947 436 aaPredicted RBP6.88□□□□□ -1.31
SYNE2-220ENST00000555612 SRD5A1P18405 259 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 UCP3P55916 312 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 FAM3BP58499 235 aaPredicted RBP6.88□□□□□ -1.31
SYNE2-220ENST00000555612 RHOGP84095 191 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 OR4C5Q8NGB2 326 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 RAB37Q96AX2 223 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 KIR2DL4Q99706 377 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 PLSCR4Q9NRQ2 329 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 TRAV24A0A0B4J272 114 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 FGFBP3Q8TAT2 258 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 GATAD1Q8WUU5 269 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 IGFBP2P18065 325 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 KLRD1Q13241 179 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 UBE2DNLQ8IWF7 75 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 CRIM1Q9NZV1 1036 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 ZFP30Q9Y2G7 519 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 IGLV3-32A0A0A0MS00 114 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 AP4M1O00189 453 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 HLA-DRB1P01911 266 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 CA7P43166 264 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 CACNA1IQ9P0X4 2223 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 TRPM7Q96QT4 1865 aa6.88□□□□□ -1.31
SYNE2-220ENST00000555612 SAPCD1Q5SSQ6 148 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 TXNDC17Q9BRA2 123 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 TMEM167AQ8TBQ9 72 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 SPSB4Q96A44 273 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 C19orf24Q9BVV8 132 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 SH3BGRL3Q9H299 93 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 DPH3P1Q9H4G8 78 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 RPRMQ9NS64 109 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 RTTNQ86VV8 2226 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MUC21A0A0G2JKD1 596 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MUC21A0A140T8X8 626 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 PRSS2P07478 247 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 SULT1A2P50226 295 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 ATP5IP56385 69 aaPredicted RBP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 RPS11P62280 158 aaKnown RBP eCLIP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MUC21Q5SSG8 566 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 LINC00114Q6XXX2 140 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 RIF1Q5UIP0 2472 aaKnown RBP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 TRBV20OR9-2A0A075B6H5 130 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 RNF223E7ERA6 249 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 K7ENP7 123 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 NPIPB7O75200 414 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 GCHFRP30047 84 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 TAS2R60P59551 318 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 ZNF362Q5T0B9 420 aaPredicted RBP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 Q71RC1 249 aaPredicted RBP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MRPL13Q9BYD1 178 aaKnown RBP6.87□□□□□ -1.31
SYNE2-220ENST00000555612 Q6ZS92 163 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 NBEAP1P0C6P0 100 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MST1P26927 711 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 GGNQ86UU5 652 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 MAPK1IP1LQ8NDC0 245 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 TM2D1Q9BX74 207 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 CDC42EP3Q9UKI2 254 aa6.87□□□□□ -1.31
SYNE2-220ENST00000555612 SCN2AQ99250 2005 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 H7C1H1 209 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 M0R143 59 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 LY6HO94772 140 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 LGALS3P17931 250 aaKnown RBP6.86□□□□□ -1.31
SYNE2-220ENST00000555612 CD33P20138 364 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 A0A0G2JMZ2 1700 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 LRRC37A2A6NM11 1700 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 CXCL2P19875 107 aa6.86□□□□□ -1.31
SYNE2-220ENST00000555612 GATA2P23769 480 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms