RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 CEBPZOSA8MTT3 80 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 SLC25A17O43808 307 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 CHST1O43916 411 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 ACTL6BO94805 426 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 IGLV2-23P01705 113 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 RNASE1P07998 156 aaKnown RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 MAS1LP35410 378 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 HSPE1P61604 102 aaKnown RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 RPL8P62917 257 aaKnown RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 ZNF345Q14585 488 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 MMDQ15546 238 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 BEAN1Q3B7T3 259 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 KLF17Q5JT82 389 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 BRD3OSQ6XYD6 125 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 MRPL41Q8IXM3 137 aaKnown RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 MMD2Q8IY49 270 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 DYNAPQ8N1N2 210 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 C9orf62Q8N4C0 152 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 C17orf50Q8WW18 174 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 AJUBAQ96IF1 538 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 EAF1Q96JC9 268 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 CITED1Q99966 193 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 QTRT1Q9BXR0 403 aaKnown RBP11.53□□□□□ -0.56
SHMT2-208ENST00000553868 COMMD5Q9GZQ3 224 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 SLC25A31Q9H0C2 315 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 MAGT1Q9H0U3 335 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 ENY2Q9NPA8 101 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 HSPB11Q9Y547 144 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 OR51B2Q9Y5P1 312 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 WSB1Q9Y6I7 421 aa11.53□□□□□ -0.56
SHMT2-208ENST00000553868 A0A0U1RQK1 487 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 RRHO14718 337 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 NBR2O15453 112 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 SCAF4O95104 1147 aaKnown RBP11.52□□□□□ -0.57
SHMT2-208ENST00000553868 NXPH3O95157 252 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 TMEM11P17152 192 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 RPP30P78346 268 aaKnown RBP11.52□□□□□ -0.57
SHMT2-208ENST00000553868 PLGLAQ15195 96 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 AANATQ16613 207 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 TUSC1Q2TAM9 212 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 NPBQ8NG41 125 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 FAM110DQ8TAY7 271 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-208ENST00000553868 SMIM8Q96KF7 97 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 AQP10Q96PS8 301 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 HIPK2Q9H2X6 1198 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 RBKSQ9H477 322 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 METTL1Q9UBP6 276 aaKnown RBP11.52□□□□□ -0.57
SHMT2-208ENST00000553868 TCF19Q9Y242 345 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 SIGLEC9Q9Y336 463 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 DNAH3Q8TD57 4116 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 COL7A1Q02388 2944 aa11.52□□□□□ -0.57
SHMT2-208ENST00000553868 TRAV3A0A0B4J244 114 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 TSC22D2O75157 780 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 RPL12P30050 165 aaKnown RBP11.51□□□□□ -0.57
SHMT2-208ENST00000553868 CAV2P51636 162 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 PRSS8Q16651 343 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 LRRC75BQ2VPJ9 315 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 PPP1R27Q86WC6 154 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 KCNRGQ8N5I3 272 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 OR2C3Q8N628 320 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 OR1L8Q8NGR8 309 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 DTD1Q8TEA8 209 aa11.51□□□□□ -0.57
SHMT2-208ENST00000553868 LYRM2Q9NU23 88 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-208ENST00000553868 DNAH9Q9NYC9 4486 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 NDUFA3O95167 84 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 CRYGBP07316 175 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 S100A11P31949 105 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 HOXA1P49639 335 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-208ENST00000553868 AP2S1P53680 142 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-208ENST00000553868 F2RL1P55085 397 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 HNF4GQ14541 408 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 LGALSLQ3ZCW2 172 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-208ENST00000553868 C9orf139Q6ZV77 190 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 Q8N6K4 173 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 MRAPQ8TCY5 172 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 RITA1Q96K30 269 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 ARL6Q9H0F7 186 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 C11orf1Q9H5F2 150 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 ZNF430Q9H8G1 570 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-208ENST00000553868 PLEKHA3Q9HB20 300 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 PSENENQ9NZ42 101 aa11.5□□□□□ -0.57
SHMT2-208ENST00000553868 DYNC2H1Q8NCM8 4307 aaKnown RBP11.49□□□□□ -0.57
SHMT2-208ENST00000553868 A0A1W2PN81 502 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 KANTRA0A1W2PQU2 76 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 RNF222A6NCQ9 220 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 IAPPP10997 89 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 CXCL2P19875 107 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 CHRNA7P36544 502 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 PRCDQ00LT1 54 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 BAXQ07812 192 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 C5orf64Q2M2E5 130 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 LAMTOR1Q6IAA8 161 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 TMUB2Q71RG4 321 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 STX12Q86Y82 276 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 FBXL15Q9H469 300 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 HEYLQ9NQ87 328 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-208ENST00000553868 PITPNC1Q9UKF7 332 aa11.49□□□□□ -0.57
SHMT2-208ENST00000553868 STRAPQ9Y3F4 350 aaKnown RBP11.49□□□□□ -0.57
SHMT2-208ENST00000553868 SOX21Q9Y651 276 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-208ENST00000553868 TEX50A0A1B0GTY4 177 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms