RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TRGC1P0CF51 173 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 CDKN2CP42773 168 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 EIF2B2P49770 351 aaKnown RBP1.55□□□□□ -2.16
VPS29-205ENST00000548539 HIST1H4AP62805 103 aaKnown RBP1.55□□□□□ -2.16
VPS29-205ENST00000548539 RPL18Q07020 188 aaKnown RBP1.55□□□□□ -2.16
VPS29-205ENST00000548539 ACOT6Q3I5F7 207 aaPredicted RBP1.55□□□□□ -2.16
VPS29-205ENST00000548539 FAM27BQ5VT28 67 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 SYPL2Q5VXT5 272 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 COA5Q86WW8 74 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 CLDN22Q8N7P3 220 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 ZNF565Q8N9K5 539 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 C8orf76Q96K31 380 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 CHST6Q9GZX3 395 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 C8orf4Q9NR00 106 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 NCKAP5O14513 1909 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 SCN9AQ15858 1988 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 GOLGA6L19H0YKK7 550 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 FAAHO00519 579 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 NOS1APO75052 506 aaPredicted RBP1.54□□□□□ -2.16
VPS29-205ENST00000548539 NAPSAO96009 420 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 HLA-DRB1P01911 266 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 SERPINA7P05543 415 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 HIST1H1TP22492 207 aaPredicted RBP1.54□□□□□ -2.16
VPS29-205ENST00000548539 OMPP47874 163 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 PSME3P61289 254 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 LSM6P62312 80 aaKnown RBP1.54□□□□□ -2.16
VPS29-205ENST00000548539 TMEM42Q69YG0 159 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 Q6ZS49 121 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 DYNAPQ8N1N2 210 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 ANKRD29Q8N6D5 301 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 DCUN1D1Q96GG9 259 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 OR52E6Q96RD3 313 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 ULBP3Q9BZM4 244 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 OR51V1Q9H2C8 321 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 TP73-AS1Q9UF72 201 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 PLB1Q6P1J6 1458 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 COL11A1P12107 1806 aaPredicted RBP1.54□□□□□ -2.16
VPS29-205ENST00000548539 MPDZO75970 2070 aa1.54□□□□□ -2.16
VPS29-205ENST00000548539 IGKV1D-43A0A0B4J1Z2 117 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 SLC22A1O15245 554 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 TCRBP04435 133 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 RPL5P46777 297 aaKnown RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 RPS20P60866 119 aaKnown RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 SNRPD2P62316 118 aaKnown RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 HBA1P69905 142 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 CCL20P78556 96 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 WRNQ14191 1432 aaPredicted RBP eCLIP1.53□□□□□ -2.16
VPS29-205ENST00000548539 KISS1Q15726 138 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 RGS21Q2M5E4 152 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 AADACL3Q5VUY0 350 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 C20orf196Q8IYI0 205 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 TMEM86AQ8N2M4 240 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 LRRC25Q8N386 305 aaPredicted RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 GBF1Q92538 1859 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 HSPB9Q9BQS6 159 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 C11orf68Q9H3H3 251 aaKnown RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 CST9LQ9H4G1 147 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.53□□□□□ -2.16
VPS29-205ENST00000548539 DOK5Q9P104 306 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 BAHCC1Q9P281 2608 aa1.53□□□□□ -2.16
VPS29-205ENST00000548539 FBN1P35555 2871 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 ZFYVE9O95405 1425 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 MTUS2Q5JR59 1369 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 KIF24Q5T7B8 1368 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 TRGV2A0A075B6R0 118 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 MEIS3P1A6NDR6 274 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 OR4C46A6NHA9 309 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 FABP5P3A8MUU1 101 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 KPNA3O00505 521 aaPredicted RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 S100A6P06703 90 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 RPS4Y1P22090 263 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 RANP62826 216 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 SUPT4H1P63272 117 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 C7orf65Q6ZTY9 151 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 MRPL30Q8TCC3 161 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 DERL1Q9BUN8 251 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 UCK1Q9HA47 277 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 PRTFDC1Q9NRG1 225 aa1.52□□□□□ -2.17
VPS29-205ENST00000548539 MRPL27Q9P0M9 148 aaKnown RBP1.52□□□□□ -2.17
VPS29-205ENST00000548539 OR51F1A6NGY5 319 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 SMIM9A6NGZ8 99 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 CIAO1O76071 339 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 IGKV1-5P01602 117 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 C1QAP02745 245 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BOP23527 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BBP33778 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BDP58876 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BCP62807 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 MOGQ16653 247 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST2H2BEQ16778 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.51□□□□□ -2.17
VPS29-205ENST00000548539 IBA57Q5T440 356 aaKnown RBP1.51□□□□□ -2.17
VPS29-205ENST00000548539 SPOPLQ6IQ16 392 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 LPCAT3Q6P1A2 487 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 FAM173BQ6P4H8 233 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 BPIFA4PQ86YQ2 179 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 C10orf126Q8N4M7 172 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BHQ93079 126 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 ITFG2Q969R8 447 aa1.51□□□□□ -2.17
VPS29-205ENST00000548539 HIST1H2BNQ99877 126 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms