RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PPP1R17O96001 155 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 CLPSP04118 112 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 GAGE10A6NGK3 116 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 HOXA5P20719 270 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 HINT1P49773 126 aaPredicted RBP10.52□□□□□ -0.73
COL4A6-209ENST00000545689 CGAP01215 116 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 CEACAM1P13688 526 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 DLX6P56179 175 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 MOSP00540 346 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 C2orf83Q53S99 150 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 TEX45Q8NA69 505 aa10.52□□□□□ -0.73
COL4A6-209ENST00000545689 IZUMO1RA6ND01 250 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 PAPPA-AS1Q5QFB9 102 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 RPP21Q9H633 154 aaKnown RBP10.51□□□□□ -0.73
COL4A6-209ENST00000545689 C17orf100A8MU93 164 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 COX6CP09669 75 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 RAX2Q96IS3 184 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 TRAV24A0A0B4J272 114 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 IGKV1D-13A0A0B4J2D9 117 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 IGKV1-13P0DP09 117 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 HTN1P15515 57 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 OR52E5Q8NH55 327 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 ZNF502Q8TBZ5 544 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 KCNS1Q96KK3 526 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 CNTRLQ7Z7A1 2325 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 SCO2A0A1W2PP80 73 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 CBLN1P23435 193 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 DNLZQ5SXM8 178 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 C9orf106Q8NAJ2 232 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 MBD3L1Q8WWY6 194 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 NABP1Q96AH0 204 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 SSBP3Q9BWW4 388 aaPredicted RBP10.51□□□□□ -0.73
COL4A6-209ENST00000545689 H0YIZ8 118 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 SAMD13Q5VXD3 122 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 CIARTQ8N365 385 aaPredicted RBP10.51□□□□□ -0.73
COL4A6-209ENST00000545689 FAM216BQ8N7L0 139 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 MRPL20Q9BYC9 149 aaKnown RBP10.51□□□□□ -0.73
COL4A6-209ENST00000545689 SEMA5BQ9P283 1151 aa10.51□□□□□ -0.73
COL4A6-209ENST00000545689 SNRPCP09234 159 aaKnown RBP10.5□□□□□ -0.73
COL4A6-209ENST00000545689 WDR82Q6UXN9 313 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 IMMP2LQ96T52 175 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 GRIFINA4D1Z8 144 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 TCTAP57738 103 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 JOSD1Q15040 202 aaPredicted RBP10.5□□□□□ -0.73
COL4A6-209ENST00000545689 FAM166AQ6J272 317 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 ZIC4Q8N9L1 334 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 GPR82Q96P67 336 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 GBF1Q92538 1859 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 GPX1P07203 203 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 RPL23P62829 140 aaKnown RBP10.5□□□□□ -0.73
COL4A6-209ENST00000545689 RSPO4Q2I0M5 234 aaPredicted RBP10.5□□□□□ -0.73
COL4A6-209ENST00000545689 OTORQ9NRC9 128 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 BSPH1Q075Z2 132 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 FAM27E3Q08E93 113 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 MORN2Q502X0 79 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 ZNF319Q9P2F9 582 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 DPRXA6NFQ7 191 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 TMEM170AQ8WVE7 144 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 TMEM242Q9NWH2 141 aa10.5□□□□□ -0.73
COL4A6-209ENST00000545689 CCL20P78556 96 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 SRSF4Q08170 494 aaKnown RBP10.49□□□□□ -0.73
COL4A6-209ENST00000545689 HERPUD1Q15011 391 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 PEAR1Q5VY43 1037 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-209ENST00000545689 NEU1Q99519 415 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 MYOFQ9NZM1 2061 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 SAA2-SAA4A0A096LPE2 208 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 C9orf172C9J069 976 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 SAA2P0DJI9 122 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-209ENST00000545689 ATP5G3P48201 142 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 SNRPD3P62318 126 aaKnown RBP10.49□□□□□ -0.73
COL4A6-209ENST00000545689 DEPPQ9NTK1 212 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 DDB2Q92466 427 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 A0A087WV48 116 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 CELA3BP08861 270 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 KIAA1644Q3SXP7 199 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 CFPP27918 469 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 C19orf54Q5BKX5 351 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 PVRIGQ6DKI7 326 aa10.49□□□□□ -0.73
COL4A6-209ENST00000545689 EAF1Q96JC9 268 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-209ENST00000545689 TRAV1-1A0A0B4J248 108 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 LGALS3P17931 250 aaKnown RBP10.48□□□□□ -0.73
COL4A6-209ENST00000545689 MBNL2Q5VZF2 373 aaKnown RBP10.48□□□□□ -0.73
COL4A6-209ENST00000545689 ARPC1AQ92747 370 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 TNFRSF14Q92956 283 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 RLFQ13129 1914 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 MIR17HGQ75NE6 70 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 GGNQ86UU5 652 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 KIR2DL4Q99706 377 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 C21orf62Q9NYP8 219 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 A0A1B0GUT8 65 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 ZNF324O75467 553 aaPredicted RBP10.48□□□□□ -0.73
COL4A6-209ENST00000545689 SAA1P0DJI8 122 aaPredicted RBP10.48□□□□□ -0.73
COL4A6-209ENST00000545689 AMMECR1LQ6DCA0 310 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 TRBV6-6A0A0A6YYG2 114 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 A0A1W2PRE2 83 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 UBE2L6O14933 153 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 CD5P06127 495 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 EGR1P18146 543 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 ATRAIDQ6UW56 229 aa10.48□□□□□ -0.73
COL4A6-209ENST00000545689 HIST1H4GQ99525 98 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms