RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NDUFAF6Q330K2 333 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 KHDC3LQ587J8 217 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 TMEM69Q5SWH9 247 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 TSPO2Q5TGU0 170 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SSX6Q7RTT6 188 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 C15orf56Q8N910 161 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 UBAC2Q8NBM4 344 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 OR10D4PQ8NGN7 298 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 OR5AK3PQ8NH89 298 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SYNPRQ8TBG9 265 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 OR5P2Q8WZ92 322 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 GHSRQ92847 366 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 S100A16Q96FQ6 103 aaKnown RBP4.81□□□□□ -1.64
LSM1-202ENST00000520286 STACQ99469 402 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SLC25A21Q9BQT8 299 aaPredicted RBP4.81□□□□□ -1.64
LSM1-202ENST00000520286 ACBD6Q9BR61 282 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 MAP1LC3CQ9BXW4 147 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SLC25A39Q9BZJ4 359 aaPredicted RBP4.81□□□□□ -1.64
LSM1-202ENST00000520286 CHST6Q9GZX3 395 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 OR52A5Q9H2C5 316 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 COMMD9Q9P000 198 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 DOK5Q9P104 306 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 CES1P1Q9UKY3 287 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SLC22A14Q9Y267 594 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 MMACHCQ9Y4U1 282 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 SMG1Q96Q15 3661 aaKnown RBP4.81□□□□□ -1.64
LSM1-202ENST00000520286 PLXNA2O75051 1894 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 NINQ8N4C6 2090 aa4.81□□□□□ -1.64
LSM1-202ENST00000520286 IGLV1-50A0A075B6I6 118 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 SMIM26A0A096LP01 95 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 IGHV1-69DA0A0B4J2H0 117 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 IGKV1-8A0A0C4DH67 115 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 TMEM269A0A1B0GVZ9 245 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 TVP23AA6NH52 213 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 OR5H1A6NKK0 313 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 BHLHE40O14503 412 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 ADAP1O75689 374 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 PMP2P02689 132 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 FGF7P21781 194 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 CCNOP22674 350 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 DTYMKP23919 212 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 HTR2CP28335 458 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 CD34P28906 385 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 CD200P41217 278 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 P2RY2P41231 377 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 LPAR6P43657 344 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 SULT1A1P50225 295 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 FXYD6P3P58550 94 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 TAS2R46P59540 309 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 SLC35B1P78383 322 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 RPL22L1Q6P5R6 122 aaKnown RBP4.8□□□□□ -1.64
LSM1-202ENST00000520286 COMMD6Q7Z4G1 85 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 LYG2Q86SG7 212 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 Q8N7P7 452 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 TMEM229BQ8NBD8 167 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 OR4K17Q8NGC6 315 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 OR13C8Q8NGS7 320 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 OR9A2Q8NGT5 310 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 OR4K15Q8NH41 348 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 PPP1R1CQ8WVI7 109 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 ASB17Q8WXJ9 295 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 MUCL1Q96DR8 90 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 AQP10Q96PS8 301 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 SULT4A1Q9BR01 284 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 DDA1Q9BW61 102 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 ATG5Q9H1Y0 275 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 CMC2Q9NRP2 79 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 ZNF223Q9UK11 482 aaPredicted RBP4.8□□□□□ -1.64
LSM1-202ENST00000520286 SDK1Q7Z5N4 2213 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 PLXND1Q9Y4D7 1925 aa4.8□□□□□ -1.64
LSM1-202ENST00000520286 A0A087WWC5 75 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 A0A0B4J2E0 115 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 GNG14A0A1W2PPG7 69 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 TMEM210A6NLX4 147 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 C9J4A7 227 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 ITGB1BP1O14713 200 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 TGOLN2O43493 480 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BKO60814 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 GCGP01275 180 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 APODP05090 189 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BJP06899 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 SOD3P08294 240 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 IGHV1-8P0DP01 117 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 PTHLHP12272 177 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BOP23527 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BBP33778 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 UBE2E1P51965 193 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 NDUFA6P56556 154 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 OR12D2P58182 307 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BDP58876 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 ACTBP60709 375 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BCP62807 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 ACTG1P63261 375 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 FUT5Q11128 374 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 DHRS2Q13268 280 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST2H2BEQ16778 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.79□□□□□ -1.64
LSM1-202ENST00000520286 C9orf64Q5T6V5 341 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 SDHAF4Q5VUM1 108 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 EIF5AL1Q6IS14 154 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms