RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CENPVL3A0A0U1RRI6 287 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 KIR2DS1A0A191URI9 304 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 ZNF878C9JN71 531 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 P2RY10O00398 339 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NDUFS4O43181 175 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NPIPB7O75200 414 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 TNFRSF6BO95407 300 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 HLA-DRB1P01911 266 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 H1F0P07305 194 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 SRP19P09132 144 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 SRP14P37108 136 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 SLC25A1P53007 311 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 PAX9P55771 341 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 RHOBP62745 196 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 GRB2P62993 217 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 SEC11AP67812 179 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 ZNF92Q03936 586 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 KIR2DS1Q14954 304 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 OR7A5Q15622 319 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 EFNB3Q15768 340 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 DUSP5Q16690 384 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 TMEM97Q5BJF2 176 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 ZNF506Q5JVG8 444 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 C6orf136Q5SQH8 315 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 DCST2Q5T1A1 773 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 LEG1Q6P5S2 330 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 SBSNQ6UWP8 590 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 MSRB3Q8IXL7 192 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 CA13Q8N1Q1 262 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 PRR26Q8N8Z3 221 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 ZDHHC22Q8N966 263 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 CDRT4Q8N9R6 151 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 OR10S1Q8NGN2 331 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 OR2G3Q8NGZ4 309 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 OR4F5Q8NH21 305 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 FAM110DQ8TAY7 271 aaPredicted RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 PP6455Q8WZ26 134 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NEIL2Q969S2 332 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 APOBEC3DQ96AK3 386 aaPredicted RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 S100A16Q96FQ6 103 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 DNAJC30Q96LL9 226 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 P2RX4Q99571 388 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 SLC25A33Q9BSK2 321 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NDFIP1Q9BT67 221 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 RBM24Q9BX46 236 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 C1QTNF4Q9BXJ3 329 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 MAP1LC3CQ9BXW4 147 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NPFFR1Q9GZQ6 430 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 PARLQ9H300 379 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 TUBB1Q9H4B7 451 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 NUDT4Q9NZJ9 180 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 FLRT3Q9NZU0 649 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 THYN1Q9P016 225 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 MTFP1Q9UDX5 166 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 KLF13Q9Y2Y9 288 aaPredicted RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 NOP16Q9Y3C1 178 aaKnown RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 ABCA13Q86UQ4 5058 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 HRNRQ86YZ3 2850 aaPredicted RBP4.5□□□□□ -1.69
NUP54-218ENST00000515460 CCDC88CQ9P219 2028 aa4.5□□□□□ -1.69
NUP54-218ENST00000515460 A0A087WUU8 490 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ODAMA1E959 279 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 RBFOX3A6NFN3 312 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ZNF727A8MUV8 499 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 C17orf112F2Z3M2 114 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 MS4A18H0YCH9 400 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 H7C1C5 153 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 TAPBPO15533 448 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 MLNRO43193 412 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ERI3O43414 337 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 TRAPPC6AO75865 159 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ZFAND5O76080 213 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 GAGE7O76087 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ACTL6BO94805 426 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SFT2D2O95562 160 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ETHE1O95571 254 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 CYB5AP00167 134 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 HBE1P02100 147 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ORM1P02763 201 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 WNT2P09544 360 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 TACSTD2P09758 323 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 LINC00032P0C843 101 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 GAGE12FP0CL80 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 GAGE12GP0CL81 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 GAGE12IP0CL82 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 LIMS3P0CW19 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 LIMS4P0CW20 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 HIST1H1EP10412 219 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 PTHLHP12272 177 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 HIST1H1DP16402 221 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 SMIM11AP58511 58 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SIRPAP78324 504 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 GAGE4Q13068 117 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 MYBPHQ13203 477 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ATXN7L3Q14CW9 347 aaPredicted RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 OR1Q1Q15612 314 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SYT14P1Q58G82 188 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 FFAR4Q5NUL3 377 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 FAM162BQ5T6X4 162 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ZFAND6Q6FIF0 208 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 RNASEKQ6P5S7 137 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms