RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 PLA2G10O15496 165 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 CDS2O95674 445 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 IFNA17P01571 189 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 OR13C7P0DN81 318 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 CD33P20138 364 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 PSMB6P28072 239 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 SLC6A1P30531 599 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 SRPXP78539 464 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 RHOGP84095 191 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 TMEM187Q14656 261 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 SPINK9Q5DT21 86 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 C19orf35Q6ZS72 473 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 MRPL41Q8IXM3 137 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 LGI3Q8N145 548 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 TTC9CQ8N5M4 171 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 OR10W1Q8NGF6 305 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 LHFPL5Q8TAF8 219 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 TMEM56Q96MV1 263 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 ZNF257Q9Y2Q1 563 aa8.89□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A0G2JLM5 398 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A1B0GW64 132 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 ANKRD34BA5PLL1 514 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 DBX1A6NMT0 343 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 NPIPB5A8MRT5 1133 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 CCL24O00175 119 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 UPK1BO75841 260 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 OR2J3O76001 311 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 BTCP35070 178 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 MYCNOSP40205 109 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 SUPT4H1P63272 117 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 ATP5G2Q06055 141 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 PPP1R1AQ13522 171 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 C4orf46Q504U0 113 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 THOC7Q6I9Y2 204 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 SLC35G3Q8N808 338 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 OR5B3Q8NH48 314 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 LSM10Q969L4 123 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 GALNT14Q96FL9 552 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 RAX2Q96IS3 184 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 ALX4Q9H161 411 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 ENY2Q9NPA8 101 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 TMEM14BQ9NUH8 114 aa8.88□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A0G2JRQ6 117 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 FAM240BA0A1B0GVZ2 78 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 CGB1A6NKQ9 187 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 CYB5BO43169 146 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 SFT2D2O95562 160 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 FGF2P09038 288 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 LGALS1P09382 135 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 ANXA7P20073 488 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 HOXA1P49639 335 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 KIAA0141Q14154 515 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 HSD17B13Q7Z5P4 300 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 FAM219AQ8IW50 185 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 CADM3Q8N126 398 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 OR11H1Q8NG94 326 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 OR1N2Q8NGR9 330 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 ENKURQ8TC29 256 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 MYOZ3Q8TDC0 251 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 C20orf85Q9H1P6 137 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 PLEKHA3Q9HB20 300 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 NDUFA4L2Q9NRX3 87 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 CACNG5Q9UF02 275 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 FBXL7Q9UJT9 491 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 TMEM56-RWDD3S4R434 201 aa8.87□□□□□ -0.99
LIMCH1-210ENST00000509454 TRAV6A0A075B6T7 132 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 A0A0B4J293 547 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 PIGBOS1A0A0B4J2F0 54 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 IGLC7A0M8Q6 106 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 FAM223BA6NKX1 122 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 ST8SIA3O43173 380 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 NXPH3O95157 252 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 HLA-AP01891 365 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 UBE2MP61081 183 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 HSPE1P61604 102 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 EXOSC2Q13868 293 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 SLC25A24Q6NUK1 477 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 FAM223AQ8IWN6 122 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 NECAP1Q8NC96 275 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 IL22RA2Q969J5 263 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 GPR146Q96CH1 333 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 USMG5Q96IX5 58 aa8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 SRSF8Q9BRL6 282 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-210ENST00000509454 I3L521 148 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 IGHV3-23P01764 117 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 TCRBP04435 133 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 P0C879 139 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 SULT1A3P0DMM9 295 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 SULT1A4P0DMN0 295 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 HIST1H1BP16401 226 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 CTRB1P17538 263 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 DEFA1P59665 94 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 DEFA3P59666 94 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 PRCDQ00LT1 54 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 WT1-ASQ06250 92 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ZNF616Q08AN1 781 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ASAH1Q13510 395 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 C15orf32Q32M92 178 aa8.85□□□□□ -0.99
LIMCH1-210ENST00000509454 ANKRD55Q3KP44 614 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms