RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 PRO2289Q9P1D8 64 aa1.77□□□□□ -2.13
USP53-204ENST00000507906 MYO16Q9Y6X6 1858 aa1.77□□□□□ -2.13
USP53-204ENST00000507906 PTPN23Q9H3S7 1636 aa1.77□□□□□ -2.13
USP53-204ENST00000507906 BIVM-ERCC5R4GMW8 1640 aa1.77□□□□□ -2.13
USP53-204ENST00000507906 ZNF407Q9C0G0 2248 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 THOC2Q8NI27 1593 aaKnown RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 TOP2AP11388 1531 aaKnown RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 NUP160Q12769 1436 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 NCOA1Q15788 1441 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 KIAA1107Q9UPP5 1409 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 NCOA3Q9Y6Q9 1424 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 IBTKQ9P2D0 1353 aaPredicted RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 A0A1B0GV50 99 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 A0A1B0GVG6 124 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 GGT3PA6NGU5 568 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 RFPL4AA6NLU0 287 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 SIGLEC16A6NMB1 481 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 RFPL4AL1F8VTS6 287 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 SERPINA1P01009 418 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 ZNF705DP0CH99 300 aaPredicted RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 CYBAP13498 195 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 FXYD7P58549 80 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 BASP1P80723 227 aaKnown RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 EDDM3AQ14507 147 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 CDK10Q15131 360 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 TAF1AQ15573 450 aaPredicted RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 TMEM97Q5BJF2 176 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 Q6ZS52 159 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 SLC35E3Q7Z769 313 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 ANKRD29Q8N6D5 301 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 MRPL30Q8TCC3 161 aaKnown RBP1.76□□□□□ -2.13
USP53-204ENST00000507906 SPACA4Q8TDM5 124 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 DCUN1D1Q96GG9 259 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 Q9BRP9 147 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 TMEM147Q9BVK8 224 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 CXCL16Q9H2A7 254 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 FBXL12Q9NXK8 326 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 IL36BQ9NZH7 164 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 FBXO5Q9UKT4 447 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 CLASP1Q7Z460 1538 aa1.76□□□□□ -2.13
USP53-204ENST00000507906 SETD5Q9C0A6 1442 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 COL5A1P20908 1838 aaPredicted RBP1.75□□□□□ -2.13
USP53-204ENST00000507906 KTN1Q86UP2 1357 aaKnown RBP1.75□□□□□ -2.13
USP53-204ENST00000507906 CDC42BPAQ5VT25 1732 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 UQCRHLA0A096LP55 91 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 TRGV4A0A0C4DH28 118 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 C2orf74A8MZ97 194 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 J3QRE1 110 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 PPBPP02775 128 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 UQCRHP07919 91 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 PEBP1P30086 187 aaKnown RBP1.75□□□□□ -2.13
USP53-204ENST00000507906 PPP1R2P41236 205 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 RAB14P61106 215 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 ZNF791Q3KP31 576 aaPredicted RBP1.75□□□□□ -2.13
USP53-204ENST00000507906 PPP1R2P3Q6NXS1 205 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 ULBP3Q9BZM4 244 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 NAT8Q9UHE5 227 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 HHLA3Q9XRX5 114 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 KIF14Q15058 1648 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 PLXNC1O60486 1568 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 KDM5CP41229 1560 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 NYNRINQ9P2P1 1898 aaKnown RBP1.75□□□□□ -2.13
USP53-204ENST00000507906 ZMYM4Q5VZL5 1548 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 UHRF1BP1LA0JNW5 1464 aa1.75□□□□□ -2.13
USP53-204ENST00000507906 CCNB3Q8WWL7 1395 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 PPRC1Q5VV67 1664 aaKnown RBP1.74□□□□□ -2.13
USP53-204ENST00000507906 VWDEQ8N2E2 1590 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 TRAV7A0A075B6U4 112 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 TMSB15BA0A087X1C1 80 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 A0A0J9YW62 118 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 A0A1B0GW54 56 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 hADV38S2A0JD32 116 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 SERPINA7P05543 415 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 DEFA3P59666 94 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 TPI1P60174 286 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 AADACL3Q5VUY0 350 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 Q8NDZ9 215 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 OR4X2Q8NGF9 303 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 DNAJC30Q96LL9 226 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 SIGMAR1Q99720 223 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 TTTY12Q9BZ98 90 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 UQCC1Q9NVA1 299 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 FAM135AQ9P2D6 1515 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 AKAP12Q02952 1782 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 DENND4BO75064 1496 aaPredicted RBP1.74□□□□□ -2.13
USP53-204ENST00000507906 RAPGEF2Q9Y4G8 1499 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 ZC3H13Q5T200 1668 aaKnown RBP1.74□□□□□ -2.13
USP53-204ENST00000507906 ITSN2Q9NZM3 1697 aa1.74□□□□□ -2.13
USP53-204ENST00000507906 ROCK2O75116 1388 aaKnown RBP1.73□□□□□ -2.13
USP53-204ENST00000507906 NUP155O75694 1391 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 LAMC1P11047 1609 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 DOCK6Q96HP0 2047 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CUX1P39880 1505 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 EXOC1LA0A1B0GW35 172 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 FAM159BA6NKW6 160 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 IGHV3-7P01780 117 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 PRM2P04554 102 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 CST2P09228 141 aa1.73□□□□□ -2.13
USP53-204ENST00000507906 UCHL1P09936 223 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 218 ms