RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 OR5D14Q8NGL3 314 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 OR1P1Q8NH06 330 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 Q8WTZ3 238 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 TAF15Q92804 592 aaKnown RBP eCLIP6.5□□□□□ -1.37
SCN1A-207ENST00000507401 SPSB1Q96BD6 273 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 AJUBAQ96IF1 538 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 SPIN2AQ99865 258 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 SPIN2BQ9BPZ2 258 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 PYGO2Q9BRQ0 406 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 C5orf66Q9H5L9 145 aa6.5□□□□□ -1.37
SCN1A-207ENST00000507401 ELL3Q9HB65 397 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-207ENST00000507401 LYRM2Q9NU23 88 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-207ENST00000507401 PUS1Q9Y606 427 aaKnown RBP eCLIP6.5□□□□□ -1.37
SCN1A-207ENST00000507401 MEGF8Q7Z7M0 2845 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 IGKV1-9A0A0C4DH69 117 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 LOC107986453A0A1B0GWG9 222 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 DUXBA0A1W2PPF3 345 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 hADV38S2A0JD32 116 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 FAM90A8PA6NJQ4 464 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 TMEM14DPA8MWL7 114 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 HSD17B6O14756 317 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 PHOX2AO14813 284 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 TIMM23O14925 209 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 ST8SIA3O43173 380 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 ANGPTL7O43827 346 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 PITX3O75364 302 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 CDS2O95674 445 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 SRP19P09132 144 aaKnown RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 TRGC1P0CF51 173 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 ZNF728P0DKX0 622 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 DUSP1P28562 367 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 KIR2DS4P43632 304 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 OR3A1P47881 315 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 CEBPDP49716 269 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 DLX1P56177 255 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 DLX6P56179 175 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 LGALS4P56470 323 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 KLRD1Q13241 179 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 GNMTQ14749 295 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 SPIN3Q5JUX0 258 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 SLC35E4Q6ICL7 350 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 PET117Q6UWS5 81 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 LHFPL2Q6ZUX7 228 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 SAXO1Q8IYX7 474 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 H1FOOQ8IZA3 346 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 FAM58AQ8N1B3 248 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 PNKDQ8N490 385 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 JAGN1Q8N5M9 183 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 ADAD2Q8NCV1 583 aaKnown RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 OR11H6Q8NGC7 330 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 OR10J5Q8NHC4 309 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 PPP1R35Q8TAP8 253 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 MARCH1Q8TCQ1 289 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 MRGPRFQ96AM1 343 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 ADAT3Q96EY9 351 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 C20orf144Q9BQM9 153 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 AGMATQ9BSE5 352 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 TMEM208Q9BTX3 173 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 TBL2Q9Y4P3 447 aaKnown RBP6.49□□□□□ -1.37
SCN1A-207ENST00000507401 WSB1Q9Y6I7 421 aa6.49□□□□□ -1.37
SCN1A-207ENST00000507401 A0A1B0GU03 582 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 A0A1W2PRD5 423 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 A0A1W2PRF3 423 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 A0A1W2PRM7 423 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 MEIS3P1A6NDR6 274 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 H3BUX3 64 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 M0QZ24 198 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 SH2D1BO14796 132 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 MGST3O14880 152 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 HMGB3O15347 200 aaKnown RBP6.48□□□□□ -1.37
SCN1A-207ENST00000507401 TRGC2P03986 189 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 RD3LP0DJH9 198 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 HIST1H1DP16402 221 aaKnown RBP6.48□□□□□ -1.37
SCN1A-207ENST00000507401 CCL3L1P16619 93 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 ZNF20P17024 532 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 ZNF25P17030 456 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-207ENST00000507401 SUPT4H1P63272 117 aaKnown RBP6.48□□□□□ -1.37
SCN1A-207ENST00000507401 QRFPP83859 136 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 PAX5Q02548 391 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 PRB3Q04118 309 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-207ENST00000507401 LRRC75BQ2VPJ9 315 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 COL5A1-AS1Q5SY13 56 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 CRIP3Q6Q6R5 217 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 ZNF664Q8N3J9 261 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 CHST4Q8NCG5 386 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 TMEM230Q96A57 120 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 ZNF714Q96N38 554 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 ZFP30Q9Y2G7 519 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 DSCAML1Q8TD84 2053 aa6.48□□□□□ -1.37
SCN1A-207ENST00000507401 VWFP04275 2813 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 CRYM-AS1A6NIL9 109 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 H3BSH0 61 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 GEMIN2O14893 280 aaKnown RBP6.47□□□□□ -1.37
SCN1A-207ENST00000507401 SCAF4O95104 1147 aaKnown RBP6.47□□□□□ -1.37
SCN1A-207ENST00000507401 HAND1O96004 215 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 TYMSP04818 313 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 IGHV1-8P0DP01 117 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 AKR1C3P42330 323 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 NPBWR2P48146 333 aa6.47□□□□□ -1.37
SCN1A-207ENST00000507401 DYNLT3P51808 116 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms