RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CT45A6P0DMU7 189 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 CT45A5P0DMU8 189 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 CT45A7P0DMV0 189 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 IL3RAP26951 378 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 RPL29P47914 159 aaKnown RBP9.81□□□□□ -0.84
NUP54-202ENST00000502850 EFNB3Q15768 340 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 ABHD12Q8N2K0 398 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 RNASE6Q93091 150 aaKnown RBP9.81□□□□□ -0.84
NUP54-202ENST00000502850 TMEM186Q96B77 213 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 SNRNP40Q96DI7 357 aaKnown RBP9.81□□□□□ -0.84
NUP54-202ENST00000502850 TMPRSS5Q9H3S3 457 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 CHODLQ9H9P2 273 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 KAAG1Q9UBP8 84 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 SH3BGRL2Q9UJC5 107 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 URGCP-MRPS24S4R325 110 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 ARL2-SNX15V9GYD0 113 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 CADP27708 2225 aa9.81□□□□□ -0.84
NUP54-202ENST00000502850 TET2Q6N021 2002 aaPredicted RBP9.8□□□□□ -0.84
NUP54-202ENST00000502850 B9A039 149 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 INS-IGF2F8WCM5 200 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 H7BYZ3 331 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 HMGB3O15347 200 aaKnown RBP9.8□□□□□ -0.84
NUP54-202ENST00000502850 CXCL1P09341 107 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 CD99P14209 185 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 B2MP61769 119 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 RPL23P62829 140 aaKnown RBP9.8□□□□□ -0.84
NUP54-202ENST00000502850 NCMAPQ5T1S8 102 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 ZNF343Q6P1L6 599 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 C1orf229Q6ZS94 237 aaPredicted RBP9.8□□□□□ -0.84
NUP54-202ENST00000502850 PDPNQ86YL7 162 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 TGIF2LYQ8IUE0 185 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 OR1L8Q8NGR8 309 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 ZNF596Q8TC21 504 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 SLC35E1Q96K37 410 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 PCGF1Q9BSM1 259 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 DOK5Q9P104 306 aa9.8□□□□□ -0.84
NUP54-202ENST00000502850 PLCE1Q9P212 2302 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 ELOA3CA0A087WX78 387 aaPredicted RBP9.79□□□□□ -0.84
NUP54-202ENST00000502850 TRBV23-1A0A0A0MS06 115 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 TGIF2-C20orf24A0A0A6YYL0 155 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 A0A1W2PN81 502 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 PPP1R2P9O14990 202 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 CLN5O75503 358 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 YIF1AO95070 293 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 CA2P00918 260 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 CD3EP07766 207 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 USF1P22415 310 aaPredicted RBP9.79□□□□□ -0.84
NUP54-202ENST00000502850 APOBEC3AP31941 199 aaPredicted RBP9.79□□□□□ -0.84
NUP54-202ENST00000502850 CHRNA7P36544 502 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 TMEM177Q53S58 311 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 C2orf83Q53S99 150 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 OR5AN1Q8NGI8 311 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 OR10X1Q8NGY0 326 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 NEUROG1Q92886 237 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 HARBI1Q96MB7 349 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 C19orf24Q9BVV8 132 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 TENM4Q6N022 2769 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 MYO18BQ8IUG5 2567 aa9.79□□□□□ -0.84
NUP54-202ENST00000502850 MMP23AO75900 390 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 SRP14P37108 136 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 SSX2Q16385 188 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TMEM200BQ69YZ2 307 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 KCNIP4Q6PIL6 250 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 SPNS3Q6ZMD2 512 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 C16orf82Q7Z2V1 217 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TMEM144Q7Z5S9 345 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 MRPL41Q8IXM3 137 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 STPG3Q8N7X2 389 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 OR4C13Q8NGP0 309 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TMEM170AQ8WVE7 144 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 H1FXQ92522 213 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 CCL17Q92583 94 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TNFRSF14Q92956 283 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 FLYWCH2Q96CP2 140 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 WFIKKN1Q96NZ8 548 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 HINT2Q9BX68 163 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 COMMD5Q9GZQ3 224 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 A0A087X0M5 115 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 A0A1B0GX30 115 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 SHISA9B4DS77 424 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 H0YJW9 148 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TNFRSF13BO14836 293 aaPredicted RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 FSTL3O95633 263 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 SAA1P0DJI8 122 aaPredicted RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 ARL14EPLP0DKL9 152 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 HOXA5P20719 270 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 ZNF137PP52743 207 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 ERHP84090 104 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 KLRB1Q12918 225 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 ARSJQ5FYB0 599 aaPredicted RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 CST9LP1Q5W188 147 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 MIC13Q5XKP0 118 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 PNKDQ8N490 385 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 SSX3Q99909 188 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 MRPL20Q9BYC9 149 aaKnown RBP9.78□□□□□ -0.84
NUP54-202ENST00000502850 DCAF16Q9NXF7 216 aa9.78□□□□□ -0.84
NUP54-202ENST00000502850 TEX50A0A1B0GTY4 177 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 S100A2P29034 98 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 MC5RP33032 325 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 GPX4P36969 197 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms