RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ACTL10Q5JWF8 245 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DMRTA1Q5VZB9 504 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 C1orf174Q8IYL3 243 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ABHD12Q8N2K0 398 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FAM169BQ8N8A8 192 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FAM216AQ8WUB2 273 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DERL1Q9BUN8 251 aa13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 HEYLQ9NQ87 328 aaPredicted RBP13.26□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PDE6DO43924 150 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CHRNA7P36544 502 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 OR5T1Q8NG75 326 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 GGTLC1Q9BX51 225 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 KCNIP2Q9NS61 270 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TMEM140Q9NV12 185 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DSCAML1Q8TD84 2053 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 XKRY2A2RUG3 117 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 AHRRA9YTQ3 701 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DSCAMO60469 2012 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 NDUFB4O95168 129 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CDKN1BP46527 198 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PDLIM4P50479 330 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ERVFC1-1P60608 527 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PRSS8Q16651 343 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ZADH2Q8N4Q0 377 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ZNF114Q8NC26 417 aa13.25□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPV4 95 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 LHBP01229 141 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CST9LP1Q5W188 147 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MIC13Q5XKP0 118 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 SLC24A4Q8NFF2 622 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PPP1R35Q8TAP8 253 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 OR2V2Q96R30 315 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 S1PR3Q99500 378 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 AURKAIP1Q9NWT8 199 aaPredicted RBP13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CALYQ9NYX4 217 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TCF19Q9Y242 345 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PXMP4Q9Y6I8 212 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 STAG3L2P0CL84 134 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 STAG3L3P0CL85 134 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 UCNP55089 124 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ERVK-16P61578 105 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 C17orf58Q2M2W7 97 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MOGAT3Q86VF5 341 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TMEM37Q8WXS4 190 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ACY3Q96HD9 319 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FUT9Q9Y231 359 aa13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 LSM4Q9Y4Z0 139 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CIDEAO60543 219 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ARL14EPLP0DKL9 152 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CD99P14209 185 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ZNF83P51522 516 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ARSJQ5FYB0 599 aaPredicted RBP13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CISD2Q8N5K1 135 aaKnown RBP13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 LEAP2Q969E1 77 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 GSX1Q9H4S2 264 aaPredicted RBP13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PRORYQ9H606 182 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 PGPEP1LA6NFU8 196 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 F6UZH7 168 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 IL3RAP26951 378 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CT45A1Q5HYN5 189 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FAM78BQ5VT40 261 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TMEM144Q7Z5S9 345 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CT45A3Q8NHU0 189 aa13.23□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CADP27708 2225 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TRBV20OR9-2A0A075B6H5 130 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TRGV8A0A0C4DH27 118 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MBD3L4A6NDZ8 208 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MBD3L3A6NE82 208 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MBD3L5A6NJ08 208 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 COL8A2P25067 703 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 KIR2DS2P43631 304 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 RPL15P61313 204 aaKnown RBP13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FAM201AQ5SY85 155 aa13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 MBD3L2Q8NHZ7 208 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 LCN2P80188 198 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 KCNIP4Q6PIL6 250 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 Q8NA96 180 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 SDSLQ96GA7 329 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 TANC2Q9HCD6 1990 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 FLNCQ14315 2725 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 C15orf61A6NNL5 157 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 DUX4L9Q6RFH8 374 aaPredicted RBP13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 CLEC2AQ6UVW9 174 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 ITLN1Q8WWA0 313 aa13.21□□□□□ -0.29
MSH5-SAPCD1-208ENST00000498473 M0R1B8 84 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SPRY3O43610 288 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 CXorf1O96002 111 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IL6RP08887 468 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 HNF1AP20823 631 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 MAJINQ3KP22 176 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF474Q6S9Z5 364 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 OR4S2Q8NH73 311 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SSMEM1Q8WWF3 244 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TMEM204Q9BSN7 226 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 NPVFQ9HCQ7 196 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 YTHDF2Q9Y5A9 579 aaKnown RBP13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SAA2-SAA4A0A096LPE2 208 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SCO2A0A1W2PP80 73 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SAA2P0DJI9 122 aaPredicted RBP13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SPATA31B1PQ5VZV4 182 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms