RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 WDR25Q64LD2 544 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 TEPPQ6URK8 271 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 RELNP78509 3460 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 hCG_1809904A0A1W2PP81 198 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 A0A1W2PR64 198 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 A0A1W2PRV1 198 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 RAB5AP20339 215 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 RPL8P62917 257 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 PNRC1Q12796 327 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 HABP2Q14520 560 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 TMEM249Q2WGJ8 235 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 C2orf83Q53S99 150 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 ZFP82Q8N141 532 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 OR4A5Q8NH83 315 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 TMEM167AQ8TBQ9 72 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 SSMEM1Q8WWF3 244 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 NEIL1Q96FI4 390 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 NDUFA4L2Q9NRX3 87 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 KCNIP2Q9NS61 270 aa17.1■□□□□ 0.33
CCDC88B-208ENST00000492980 IGLV2-23P01705 113 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 USF1P22415 310 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 IL3RAP26951 378 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 OR10W1Q8NGF6 305 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 SDF2L1Q9HCN8 221 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 A0A1W2PPV4 95 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 B4DEV8 164 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 TMEM250H0YL14 139 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 NDUFS6O75380 124 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 RNASE2P10153 161 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 ATP5IP56385 69 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 VSTM2AQ8TAG5 236 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 TNFRSF14Q92956 283 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 COMMD5Q9GZQ3 224 aa17.09■□□□□ 0.33
CCDC88B-208ENST00000492980 IGHV2-26A0A0B4J1V2 119 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 PAGE4O60829 102 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 DLX1P56177 255 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 OR1L8Q8NGR8 309 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 C2CD4CQ8TF44 421 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 RAB1BQ9H0U4 201 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 SAV1Q9H4B6 383 aaPredicted RBP17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 CBLN4Q9NTU7 201 aa17.08■□□□□ 0.33
CCDC88B-208ENST00000492980 B2MP61769 119 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 C11orf71Q6IPW1 123 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 STPG3Q8N7X2 389 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 OR4F5Q8NH21 305 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 OR4F4Q96R69 305 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 SIRT7Q9NRC8 400 aa17.08■□□□□ 0.32
CCDC88B-208ENST00000492980 C1orf196B1AJZ1 125 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 IGLV1-47P01700 117 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 SFTPCP11686 197 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 IGFBP2P18065 325 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 MC5RP33032 325 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 RAB5BP61020 215 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 UNQ6494/PRO21346Q6UXR6 183 aa17.07■□□□□ 0.32
CCDC88B-208ENST00000492980 E7EUB6 86 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 INS-IGF2F8WCM5 200 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 LY6HO94772 140 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 RPL29P47914 159 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 RAB31Q13636 194 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 C8orf46Q8TAG6 207 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 FAM122AQ96E09 287 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 SMIM7Q9BQ49 75 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 NBASA2RRP1 2371 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 PPIAL4CA0A0B4J2A2 164 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 CXorf65A6NEN9 183 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 STAG3L2P0CL84 134 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 STAG3L3P0CL85 134 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 PPIAL4GP0DN37 164 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 AGAP20933 346 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 PRB3Q04118 309 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 HLA-DRB5Q30154 266 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 MOB3BQ86TA1 216 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 OR8B3Q8NGG8 313 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 MALSU1Q96EH3 234 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 RITA1Q96K30 269 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 OR8B2Q96RD0 313 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 ZNF430Q9H8G1 570 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 NAT8Q9UHE5 227 aa17.06■□□□□ 0.32
CCDC88B-208ENST00000492980 CGB1A6NKQ9 187 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 RBP4P02753 201 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRR20EP86478 221 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRR20CP86479 221 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRR20DP86480 221 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRR20BP86481 221 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRR20AP86496 221 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 CYP2G1PQ6ZSU1 146 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 RPUSD4Q96CM3 377 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 BIN3Q9NQY0 253 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 MIOXQ9UGB7 285 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 SOD3P08294 240 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PRRX1P54821 245 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 ZNF674Q2M3X9 581 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 ZNF343Q6P1L6 599 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 TMEM144Q7Z5S9 345 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 ABHD5Q8WTS1 349 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 CLEC7AQ9BXN2 247 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 PARLQ9H300 379 aa17.05■□□□□ 0.32
CCDC88B-208ENST00000492980 MALRD1Q5VYJ5 2156 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 CHD8Q9HCK8 2581 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 C11orf94C9JXX5 98 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms