RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TNFSF13O75888 250 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 NDUFB4O95168 129 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 HLA-DQA1P01909 254 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 OR5G3P0C626 314 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 IGHV1-2P23083 117 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 GCHFRP30047 84 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 LGALS4P56470 323 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 LOXL3P58215 753 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 ERVS71-1P61550 626 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 CX3CL1P78423 397 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 SRYQ05066 204 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 TFF3Q07654 80 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 IZUMO4Q1ZYL8 232 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 MORN2Q502X0 79 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 FAM162BQ5T6X4 162 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 PRAMEF5Q5TYX0 476 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 PRAMEF6Q5VXH4 476 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 FAM231DQ6ZW35 169 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 GCNT2Q8N0V5 402 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 C8orf31Q8N9H6 132 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 OR4B1Q8NGF8 309 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 OR5B3Q8NH48 314 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 CMTM2Q8TAZ6 248 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 FAM222BQ8WU58 562 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 MS4A10Q96PG2 267 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 RBM14Q96PK6 669 aaKnown RBP4.79□□□□□ -1.64
VPS41-214ENST00000490924 S1PR3Q99500 378 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 MGST2Q99735 147 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 ELOVL1Q9BW60 279 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 IFI27L2Q9H2X8 130 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 HEYLQ9NQ87 328 aaPredicted RBP4.79□□□□□ -1.64
VPS41-214ENST00000490924 PLSCR4Q9NRQ2 329 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 MRPL27Q9P0M9 148 aaKnown RBP4.79□□□□□ -1.64
VPS41-214ENST00000490924 TCF19Q9Y242 345 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 CHD6Q8TD26 2715 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 WDR87Q6ZQQ6 2873 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 NCOR2Q9Y618 2525 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 TRBV20OR9-2A0A075B6H5 130 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 A0A0U1RQK1 487 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 ZNF320A2RRD8 509 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 FAM166BA8MTA8 275 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 AHRRA9YTQ3 701 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 SMAD7O15105 426 aaKnown RBP4.78□□□□□ -1.64
VPS41-214ENST00000490924 RBMXL2O75526 392 aaKnown RBP4.78□□□□□ -1.64
VPS41-214ENST00000490924 NXPH3O95157 252 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 LHBP01229 141 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 IGHV3-13P01766 116 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 OR9G9P0C7N8 305 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 LINC00614P0C842 121 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 ARL14EPLP0DKL9 152 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 NPY1RP25929 384 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 GCH1P30793 250 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 PRDX2P32119 198 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 MPV17P39210 176 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 PAX2Q02962 417 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 AESQ08117 197 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 ZNF816Q0VGE8 651 aaPredicted RBP4.78□□□□□ -1.64
VPS41-214ENST00000490924 EFNB3Q15768 340 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 RNF151Q2KHN1 245 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 RPEL1Q2QD12 228 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 C2orf83Q53S99 150 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 PDZD11Q5EBL8 140 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 TPTE2P1Q5T6R2 138 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 FAM78BQ5VT40 261 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 C9orf135Q5VTT2 229 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 C19orf35Q6ZS72 473 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 SLC24A4Q8NFF2 622 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 STXBP6Q8NFX7 210 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 OR52L2PQ8NGH6 319 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 OR13A1Q8NGR1 328 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 OR1L8Q8NGR8 309 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 OR4A5Q8NH83 315 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 GATAD1Q8WUU5 269 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 TMEM37Q8WXS4 190 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 SARAFQ96BY9 339 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 MIEN1Q9BRT3 115 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 TMEM140Q9NV12 185 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 BET1LQ9NYM9 111 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 TECRQ9NZ01 308 aaKnown RBP4.78□□□□□ -1.64
VPS41-214ENST00000490924 GNG12Q9UBI6 72 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 SOX21Q9Y651 276 aaPredicted RBP4.78□□□□□ -1.64
VPS41-214ENST00000490924 CACNA1BQ00975 2339 aa4.78□□□□□ -1.64
VPS41-214ENST00000490924 IGLV3-9A0A075B6K5 115 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 TRAV17A0A0B4J275 112 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 IGHV2OR16-5A0A0B4J2B6 119 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 KBTBD11-OT1A0A1B0GTJ5 212 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 TCAPO15273 167 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 TIMM8AO60220 97 aaPredicted RBP4.77□□□□□ -1.65
VPS41-214ENST00000490924 PROP1O75360 226 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 CRISP2P16562 243 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 BRS3P32247 399 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 RPL31P62899 125 aaKnown RBP4.77□□□□□ -1.65
VPS41-214ENST00000490924 PRCDQ00LT1 54 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 PMP22Q01453 160 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 ZNF90Q03938 601 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 TLE1Q04724 770 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 TIGITQ495A1 244 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 CT83Q5H943 113 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 CST9LP1Q5W188 147 aa4.77□□□□□ -1.65
VPS41-214ENST00000490924 ATP5L2Q7Z4Y8 100 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms