RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	OR2C3	Q8N628	320 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	OR10W1	Q8NGF6	305 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	CD300LF	Q8TDQ1	290 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	VN1R17P	Q8TDU5	208 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	C5orf66	Q9H5L9	145 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	RNF167	Q9H6Y7	350 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905	AUNIP	Q9H7T9	357 aa		13.71	□□□□□ -0.21
HDAC6-231	ENST00000488905		A0A0J9YWU9	116 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	CXorf65	A6NEN9	183 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	OR2T8	A6NH00	312 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	CBX5	P45973	191 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	APOC4	P55056	127 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	WFDC3	Q8IUB2	231 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	SLC38A6	Q8IZM9	456 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	OR5AP2	Q8NGF4	316 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	GIMAP1	Q8WWP7	306 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	BSCL2	Q96G97	398 aa	Predicted RBP	13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	DAZ1	Q9NQZ3	744 aa	Known RBP	13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	UBQLN2	Q9UHD9	624 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	TP53TG1	Q9Y2A0	90 aa		13.7	□□□□□ -0.22
HDAC6-231	ENST00000488905	LOC100506127	A0A0U1RQW1	187 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	NUPR2	A6NF83	97 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	MARCH11	A6NNE9	402 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	TSPAN4	O14817	238 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	SERPINE2	P07093	398 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	TRAPPC2	P0DI81	140 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	TRAPPC2B	P0DI82	140 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	RPA2	P15927	270 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	HERV-K104	P61576	105 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	ERVK-16	P61578	105 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	WT1-AS	Q06250	92 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	TNFRSF9	Q07011	255 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	DEFB135	Q30KP9	77 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905		Q6ZWC4	215 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	DIABLO	Q9NR28	239 aa		13.69	□□□□□ -0.22
HDAC6-231	ENST00000488905	MEIS3P1	A6NDR6	274 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	RLN1	P04808	185 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	OR13C7	P0DN81	318 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	BMI1	P35226	326 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	EWSR1	Q01844	656 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	ODF3L2	Q3SX64	289 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	SPSB3	Q6PJ21	355 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	LYG2	Q86SG7	212 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	OR1L8	Q8NGR8	309 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	BORCS5	Q969J3	196 aa		13.68	□□□□□ -0.22
HDAC6-231	ENST00000488905	DNAH10	Q8IVF4	4471 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	TEX50	A0A1B0GTY4	177 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	NDUFA4	O00483	81 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	SPRY2	O43597	315 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	GNRHR	P30968	328 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	SLC25A24	Q6NUK1	477 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	LSM10	Q969L4	123 aa	Known RBP	13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	YTHDF1	Q9BYJ9	559 aa	Known RBP	13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	IFT46	Q9NQC8	304 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	EHF	Q9NZC4	300 aa		13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	F11R	Q9Y624	299 aa	Known RBP	13.67	□□□□□ -0.22
HDAC6-231	ENST00000488905	LY6G6C	O95867	125 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	MFAP2	P55001	183 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	LAMTOR1	Q6IAA8	161 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	ATP6V0B	Q99437	205 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	CHRDL1	Q9BU40	450 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905		Q9H521	79 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	NDUFA4L2	Q9NRX3	87 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	C21orf62	Q9NYP8	219 aa		13.66	□□□□□ -0.22
HDAC6-231	ENST00000488905	IGHV3-21	A0A0B4J1V1	117 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	KIR2DL5B	A0A0G2JN68	375 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	KIR2DL5B	A0A0G2JPC4	375 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905		F8W735	103 aa	Predicted RBP	13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	UBE2C	O00762	179 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	F2R	P25116	425 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	KIR2DL5A	Q8N109	375 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	KIR2DL5B	Q8NHK3	375 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	MOB3A	Q96BX8	217 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	C20orf24	Q9BUV8	137 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	HINT2	Q9BX68	163 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	ANAPC10	Q9UM13	185 aa		13.65	□□□□□ -0.22
HDAC6-231	ENST00000488905	DNAH6	Q9C0G6	4158 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	IGHV3OR16-8	A0A075B7F1	116 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	OR4C46	A6NHA9	309 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905		K7EIM0	57 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	XRCC3	O43542	346 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	TMEM127	O75204	238 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	ATF4	P18848	351 aa	Predicted RBP	13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	CEMP1	Q6PRD7	247 aa	Predicted RBP	13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	STPG3	Q8N7X2	389 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	UBAC2	Q8NBM4	344 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	SCARB1	Q8WTV0	552 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	FCAMR	Q8WWV6	532 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	ZNF2	Q9BSG1	426 aa	Predicted RBP	13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	FXYD6	Q9H0Q3	95 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	NSG2	Q9Y328	171 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905	OR51B2	Q9Y5P1	312 aa		13.64	□□□□□ -0.23
HDAC6-231	ENST00000488905		K7EMT4	169 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	ZNF207	O43670	478 aa	Known RBP	13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	PGLYRP1	O75594	196 aa	Predicted RBP	13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	KRAS	P01116	189 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	ADM	P35318	185 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	G6PC	P35575	357 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	LPAR6	P43657	344 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 46 ms