RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TRBV6-7A0A0A0MS04 114 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 CECR9P0C854 216 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 MEIG1Q5JSS6 88 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 IMMP1LQ96LU5 166 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 C7orf71A4D174 169 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 ARF6P62330 175 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 PAQR4Q8N4S7 273 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-210ENST00000487017 FAM89BQ8N5H3 189 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 LIPFP07098 398 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 SP9P0CG40 484 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 CTAG1AP78358 180 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 ICAM4Q14773 271 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 MBNL2Q5VZF2 373 aaKnown RBP13.87□□□□□ -0.19
COL7A1-210ENST00000487017 LINC00469Q8N7U9 141 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 PPP1R17O96001 155 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 TIMM23BQ5SRD1 257 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 TRAV9-1A0A075B6T8 112 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 IL4P05112 153 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 SFTPCP11686 197 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 IMMP2LQ96T52 175 aa13.87□□□□□ -0.19
COL7A1-210ENST00000487017 COLQQ9Y215 455 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-210ENST00000487017 IGLV3-12A0A075B6K2 115 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 TM4SF5O14894 197 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 RBFOX2O43251 390 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 PNKDQ8N490 385 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 NPIPB7O75200 414 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 EMP1P54849 157 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 ACSF3Q4G176 576 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 MRPS18CQ9Y3D5 142 aaKnown RBP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 MRPL14Q6P1L8 145 aaKnown RBP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 RAX2Q96IS3 184 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 DUX5Q96PT3 197 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 TBL2Q9Y4P3 447 aaKnown RBP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 TBR1Q16650 682 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 GPX1P07203 203 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 SAPCD1Q5SSQ6 148 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 C1orf162Q8NEQ5 155 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-210ENST00000487017 OR4D5Q8NGN0 318 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 GPR82Q96P67 336 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 ELOVL5Q9NYP7 299 aa13.86□□□□□ -0.19
COL7A1-210ENST00000487017 LOC105371242A0A075B767 164 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 NBEAP1P0C6P0 100 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 RPL23P62829 140 aaKnown RBP13.85□□□□□ -0.19
COL7A1-210ENST00000487017 ZNF56Q15929 161 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 IGKV1D-13A0A0B4J2D9 117 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 IGKV1-13P0DP09 117 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 PLPPR1Q8TBJ4 325 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 A0A0A6YYD4 124 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 PEX7O00628 323 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 FOXA3P55318 350 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-210ENST00000487017 PSG7Q13046 419 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 NUP37Q8NFH4 326 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 IGHV3OR16-13A0A075B7E8 117 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 IGHV3-74A0A0B4J1X5 117 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 ATP5G2Q06055 141 aa13.85□□□□□ -0.19
COL7A1-210ENST00000487017 IQCF6A8MYZ5 107 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 TMEM136Q6ZRR5 245 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 FDCSPQ8NFU4 85 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 IGLV3-32A0A0A0MS00 114 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 KBTBD11-OT1A0A1B0GTJ5 212 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 KLRB1Q12918 225 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 WBP1Q96G27 269 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 CACNA1IQ9P0X4 2223 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 GREB1Q4ZG55 1949 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 KCNS1Q96KK3 526 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 WNT10AQ9GZT5 417 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 DOCK4Q8N1I0 1966 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 B9A039 149 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 CRIPAKQ8N1N5 446 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 OR13C6PQ8NH95 151 aa13.84□□□□□ -0.19
COL7A1-210ENST00000487017 PSMB11A5LHX3 300 aa13.83□□□□□ -0.19
COL7A1-210ENST00000487017 FAM106AQ4KMX7 169 aa13.83□□□□□ -0.19
COL7A1-210ENST00000487017 FAM90A1Q86YD7 464 aa13.83□□□□□ -0.19
COL7A1-210ENST00000487017 TMEM262E9PQX1 116 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 MIR17HGQ75NE6 70 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 DCTN5Q9BTE1 182 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 IGHV2OR16-5A0A0B4J2B6 119 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 UMODP07911 640 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 LINC00271P0C7V0 271 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 ZNF319Q9P2F9 582 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 EEF1AKMT3Q96AZ1 226 aa13.83□□□□□ -0.2
COL7A1-210ENST00000487017 NPPCP23582 126 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 DMRTA1Q5VZB9 504 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 TMEM106BQ9NUM4 274 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 IGHV1-2P23083 117 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 LRTM2Q8N967 370 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 IGHV3-23P01764 117 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 FMC1Q96HJ9 113 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 PIMREGQ9BSJ6 248 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 FAM216BQ8N7L0 139 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 SOX21Q9Y651 276 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-210ENST00000487017 TRBV20OR9-2A0A075B6H5 130 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 A1L4Q6 167 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 FAM201AQ5SY85 155 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 CACNG8Q8WXS5 425 aa13.82□□□□□ -0.2
COL7A1-210ENST00000487017 FOXI3A8MTJ6 420 aaPredicted RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 CIRBPQ14011 172 aaKnown RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 TMEM170AQ8WVE7 144 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 GTF3AQ92664 365 aaKnown RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 FAM131CQ96AQ9 280 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms