RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 IQCF5A8MTL0 148 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 RNASE3P12724 160 aaKnown RBP0.37□□□□□ -2.35
VPS50-217ENST00000485140 BRS3P32247 399 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 STX5Q13190 355 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 CST9Q5W186 159 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 GLT8D1Q68CQ7 371 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 C10orf67Q8IYJ2 551 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 C1orf158Q8N1D5 194 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 GPR32P1Q8NGA4 272 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 OR5B17Q8NGF7 314 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 TMEM106AQ96A25 262 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 OR8D2Q9GZM6 311 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 PAQR5Q9NXK6 330 aaPredicted RBP0.37□□□□□ -2.35
VPS50-217ENST00000485140 COQ4Q9Y3A0 265 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 PXMP4Q9Y6I8 212 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 TTC21AQ8NDW8 1320 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 RP1P56715 2156 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 C1orf232A0A0U1RR37 186 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 FABP5P3A8MUU1 101 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 CLDN25C9JDP6 229 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 GOLGA6L19H0YKK7 550 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 LST1O00453 97 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 APOEP02649 317 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 RPS4Y1P22090 263 aaKnown RBP0.36□□□□□ -2.35
VPS50-217ENST00000485140 PPP1R1AQ13522 171 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 ZNF846Q147U1 533 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 IBA57Q5T440 356 aaKnown RBP0.36□□□□□ -2.35
VPS50-217ENST00000485140 C1orf194Q5T5A4 169 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 FUNDC1Q8IVP5 155 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 OR4D11Q8NGI4 311 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 MCFD2Q8NI22 146 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 C7orf50Q9BRJ6 194 aaKnown RBP0.36□□□□□ -2.35
VPS50-217ENST00000485140 IL36BQ9NZH7 164 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 CKLFQ9UBR5 152 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 KLK9Q9UKQ9 250 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 C15orf41Q9Y2V0 281 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 RAD50Q92878 1312 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 EXPH5Q8NEV8 1989 aa0.36□□□□□ -2.35
VPS50-217ENST00000485140 LOC110117498A0A087WWA1 95 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 PFDN6O15212 129 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 COCHO43405 550 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 HYPMO75409 117 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 HLA-DRAP01903 254 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 UCHL3P15374 230 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 ZNF80P51504 273 aaPredicted RBP0.35□□□□□ -2.35
VPS50-217ENST00000485140 SUPT4H1P63272 117 aaKnown RBP0.35□□□□□ -2.35
VPS50-217ENST00000485140 TNFAIP6P98066 277 aaPredicted RBP0.35□□□□□ -2.35
VPS50-217ENST00000485140 IFITM2Q01629 132 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 SYPL2Q5VXT5 272 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 CLEC6AQ6EIG7 209 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 PLEKHG7Q6ZR37 379 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 PHF13Q86YI8 300 aaPredicted RBP0.35□□□□□ -2.35
VPS50-217ENST00000485140 TMEM161BQ8NDZ6 487 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 DNAJB3Q8WWF6 145 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 CMTM5Q96DZ9 223 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 DIRAS2Q96HU8 199 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 HDHD2Q9H0R4 259 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 HEATR5AQ86XA9 2040 aa0.35□□□□□ -2.35
VPS50-217ENST00000485140 A0A1B0GV50 99 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 FABP12A6NFH5 140 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 CALUO43852 315 aaPredicted RBP0.34□□□□□ -2.36
VPS50-217ENST00000485140 NDUFS6O75380 124 aaKnown RBP0.34□□□□□ -2.36
VPS50-217ENST00000485140 PRM2P04554 102 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 TYMSP04818 313 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 KRT7P08729 469 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 FAM228BP0C875 321 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 MYL12AP19105 171 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 CASQ1P31415 396 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 RSU1Q15404 277 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 KCNJ8Q15842 424 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 SPANXN5Q5MJ07 72 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 LCN15Q6UWW0 184 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 ZNF550Q7Z398 422 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 DEFB128Q7Z7B8 93 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 COMMD7Q86VX2 200 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 RASSF5Q8WWW0 418 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 OBSCN-AS1Q96MR7 158 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 MAP1LC3AQ9H492 121 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 EFCAB1Q9HAE3 211 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 ANAPC1Q9H1A4 1944 aa0.34□□□□□ -2.36
VPS50-217ENST00000485140 IGKV1D-42A0A075B6H8 117 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 GOLGA8KD6RF30 607 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 F5H768 121 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 FADS1O60427 444 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 REG1AP05451 166 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 HTR1AP08908 422 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 ASAH2BP0C7U1 165 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 CCL1P22362 96 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 PSMB6P28072 239 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 ZNF93P35789 620 aaPredicted RBP0.33□□□□□ -2.36
VPS50-217ENST00000485140 CCL20P78556 96 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 MED21Q13503 144 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 GRK1Q15835 563 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 DPPA3Q6W0C5 159 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 ZNF826PQ6ZT77 177 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 OOSP2Q86WS3 158 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 FAM9CQ8IZT9 166 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 Q8N814 137 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 CNBD2Q96M20 576 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 SCGB3A1Q96QR1 104 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms