RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 NUP62P37198 522 aaPredicted RBP9.56□□□□□ -0.88
PTPRF-213ENST00000481019 H2BFSP57053 126 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 ZNF585BQ52M93 769 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 KHDC1LQ5JSQ8 128 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 ETV3LQ6ZN32 361 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 NOXA1Q86UR1 476 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 DMBX1Q8NFW5 382 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 OR4X2Q8NGF9 303 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 R3HDM4Q96D70 268 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 HARBI1Q96MB7 349 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 TSNAXQ99598 290 aaKnown RBP9.56□□□□□ -0.88
PTPRF-213ENST00000481019 KLK15Q9H2R5 256 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.56□□□□□ -0.88
PTPRF-213ENST00000481019 GSKIPQ9P0R6 139 aa9.56□□□□□ -0.88
PTPRF-213ENST00000481019 TSSC4Q9Y5U2 329 aaPredicted RBP9.56□□□□□ -0.88
PTPRF-213ENST00000481019 ST8SIA3O43173 380 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 MED6O75586 246 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 SIX6O95475 246 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 KRASP01116 189 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 IGHG4P01861 327 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 RPL23AP62750 156 aaKnown RBP9.55□□□□□ -0.88
PTPRF-213ENST00000481019 KIAA0141Q14154 515 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-213ENST00000481019 PLGLAQ15195 96 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 NMSQ5H8A3 153 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 VKORC1L1Q8N0U8 176 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 RNF152Q8N8N0 203 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 ZBTB8BQ8NAP8 495 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-213ENST00000481019 OR1S1Q8NH92 325 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 PPP1R1CQ8WVI7 109 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 SEC22AQ96IW7 307 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 FYTTD1Q96QD9 318 aaKnown RBP9.55□□□□□ -0.88
PTPRF-213ENST00000481019 FKBP11Q9NYL4 201 aa9.55□□□□□ -0.88
PTPRF-213ENST00000481019 TRAV41A0A0B4J266 112 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 MARCH11A6NNE9 402 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 HMSDA8MTL9 139 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 WRBO00258 174 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 CCSO14618 274 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 SHOXO15266 292 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 RAMP3O60896 148 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 RBMXL2O75526 392 aaKnown RBP9.54□□□□□ -0.88
PTPRF-213ENST00000481019 SPDEFO95238 335 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 OPN1MWP04001 364 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 OPN1MW2P0DN77 364 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 OPN1MW3P0DN78 364 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 SLC25A4P12235 298 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 PSMB8P28062 276 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 NKX2-1P43699 371 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-213ENST00000481019 EIF2B2P49770 351 aaKnown RBP9.54□□□□□ -0.88
PTPRF-213ENST00000481019 POU2AF1Q16633 256 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 ECSCRQ19T08 205 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 TMEM65Q6PI78 240 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 C8orf86Q6ZUL3 223 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 C1QL4Q86Z23 238 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 OR4A5Q8NH83 315 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 LHFPL5Q8TAF8 219 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 DUX3Q96PT4 197 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 ZNF580Q9UK33 172 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 NOTCH3Q9UM47 2321 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 TNCP24821 2201 aa9.54□□□□□ -0.88
PTPRF-213ENST00000481019 G3V4G9 280 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 S1PR2O95136 353 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 MPC2O95563 127 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 IGLV1-40P01703 118 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 FGF2P09038 288 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 SAA1P0DJI8 122 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-213ENST00000481019 CRIP2P52943 208 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-213ENST00000481019 GNB1P62873 340 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 SLC35B1P78383 322 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 FOXE3Q13461 319 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 DEFB136Q30KP8 78 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 VMA21Q3ZAQ7 101 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 ASPHD1Q5U4P2 390 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 C11orf87Q6NUJ2 197 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 TEX38Q6PEX7 206 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 ZNF562Q6V9R5 426 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 PPP1R27Q86WC6 154 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 INO80EQ8NBZ0 244 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-213ENST00000481019 OR4A16Q8NH70 328 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 MYOZ3Q8TDC0 251 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 GPR146Q96CH1 333 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 OR10C1Q96KK4 312 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 RHOVQ96L33 236 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 GNB4Q9HAV0 340 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 PRR13Q9NZ81 148 aa9.53□□□□□ -0.88
PTPRF-213ENST00000481019 E5RGE8 158 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 SCAF4O95104 1147 aaKnown RBP9.52□□□□□ -0.89
PTPRF-213ENST00000481019 MYOD1P15172 320 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 G6PCP35575 357 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 UBE2KP61086 200 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 ID3Q02535 119 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 IL15RAQ13261 267 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 FXYD3Q14802 87 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 PRSS8Q16651 343 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 C10orf55Q5SWW7 151 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 PRSS54Q6PEW0 395 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 MRPL41Q8IXM3 137 aaKnown RBP9.52□□□□□ -0.89
PTPRF-213ENST00000481019 COMMD1Q8N668 190 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 KLHL30-AS1Q8NEE0 82 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 LFNGQ8NES3 379 aa9.52□□□□□ -0.89
PTPRF-213ENST00000481019 OR4F17Q8NGA8 305 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms