RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 IMMP2LQ96T52 175 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 SIGMAR1Q99720 223 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 TMEM147Q9BVK8 224 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 OR8D2Q9GZM6 311 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 NMNAT1Q9HAN9 279 aaPredicted RBP2.35□□□□□ -2.03
UPF3B-203ENST00000478840 ARL5AQ9Y689 179 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 KDM5BQ9UGL1 1544 aa2.35□□□□□ -2.03
UPF3B-203ENST00000478840 NEO1Q92859 1461 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 IGHV3-64A0A075B6Q5 118 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 OR2B3O76000 313 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 IGKV1-5P01602 117 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 LGALS1P09382 135 aaKnown RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 CYBAP13498 195 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 CCR2P41597 374 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 RPL28P46779 137 aaKnown RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 RAB14P61106 215 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 HBA1P69905 142 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 LIN52Q52LA3 116 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 IBA57Q5T440 356 aaKnown RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 TEX36Q5VZQ5 186 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 C12orf45Q8N5I9 185 aaPredicted RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 OR51A2Q8NGJ7 313 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 CT55Q8WUE5 264 aa2.34□□□□□ -2.03
UPF3B-203ENST00000478840 KLF6Q99612 283 aaPredicted RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 SAMHD1Q9Y3Z3 626 aaKnown RBP2.34□□□□□ -2.03
UPF3B-203ENST00000478840 PTPRSQ13332 1948 aa2.34□□□□□ -2.04
UPF3B-203ENST00000478840 ADGRB3O60242 1522 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 TRAV7A0A075B6U4 112 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 IGKV1D-43A0A0B4J1Z2 117 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 TRGV4A0A0C4DH28 118 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 EXOC1LA0A1B0GW35 172 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 J3QRE1 110 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 KLRC4O43908 158 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 PDE6DO43924 150 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 CREBL2O60519 120 aaPredicted RBP2.33□□□□□ -2.04
UPF3B-203ENST00000478840 SERPINA7P05543 415 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 MSMBP08118 114 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 CSRP1P21291 193 aaKnown RBP2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BOP23527 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HLA-DMBP28068 263 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BBP33778 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BDP58876 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 KRTAP10-1P60331 282 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BCP62807 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST2H2BEQ16778 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 C12orf74Q32Q52 190 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 KRTAP6-3Q3LI67 103 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.33□□□□□ -2.04
UPF3B-203ENST00000478840 RPL22L1Q6P5R6 122 aaKnown RBP2.33□□□□□ -2.04
UPF3B-203ENST00000478840 GDPD1Q8N9F7 314 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 Q8NDZ9 215 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 OR51T1Q8NGJ9 327 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 OR10X1Q8NGY0 326 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BHQ93079 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BNQ99877 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 HIST1H2BMQ99879 126 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 RNASE7Q9H1E1 156 aaKnown RBP2.33□□□□□ -2.04
UPF3B-203ENST00000478840 MAST2Q6P0Q8 1798 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 DOCK5Q9H7D0 1870 aa2.33□□□□□ -2.04
UPF3B-203ENST00000478840 TRAV41A0A0B4J266 112 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 IRGMA1A4Y4 181 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 DPRXA6NFQ7 191 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 FAM159BA6NKW6 160 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 FNDC10F2Z333 226 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 H3BT86 120 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 CRYZL1O95825 349 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 IGHV3-7P01780 117 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 SMIM10L2AP0DMW4 78 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 SMIM10L2BP0DMW5 78 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 MSNP26038 577 aaKnown RBP2.32□□□□□ -2.04
UPF3B-203ENST00000478840 G6PCP35575 357 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 EVX1P49640 407 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 AADACL3Q5VUY0 350 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 ZNF705AQ6ZN79 300 aaPredicted RBP2.32□□□□□ -2.04
UPF3B-203ENST00000478840 RPP25LQ8N5L8 163 aaKnown RBP2.32□□□□□ -2.04
UPF3B-203ENST00000478840 PXT1Q8NFP0 134 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 PHOSPHO2Q8TCD6 241 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 ACOT12Q8WYK0 555 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 TOMM6Q96B49 74 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 DERL1Q9BUN8 251 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 KIFC1Q9BW19 673 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 C11orf68Q9H3H3 251 aaKnown RBP2.32□□□□□ -2.04
UPF3B-203ENST00000478840 C14orf105Q9NVL8 296 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 TIMM22Q9Y584 194 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 TIMM9Q9Y5J7 89 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 COL5A1P20908 1838 aaPredicted RBP2.32□□□□□ -2.04
UPF3B-203ENST00000478840 MYO9BQ13459 2157 aa2.32□□□□□ -2.04
UPF3B-203ENST00000478840 FABP5P3A8MUU1 101 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 H7C2G1 150 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 PIRO00625 290 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 ZNF682O95780 498 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 SERPINE1P05121 402 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 RBP1P09455 135 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 SULT1A3P0DMM9 295 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 SULT1A4P0DMN0 295 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 Q6ZTI0 123 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 SLC7A6Q92536 515 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 TP73-AS1Q9UF72 201 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 ZNF532Q9HCE3 1301 aa2.31□□□□□ -2.04
UPF3B-203ENST00000478840 EIF3AQ14152 1382 aaKnown RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms