RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 EMP1P54849 157 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 KTN1-AS1Q86SY8 53 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 OR52E6Q96RD3 313 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 HSPB9Q9BQS6 159 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 CHST6Q9GZX3 395 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 FLT4P35916 1363 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 MTUS2Q5JR59 1369 aa2.17□□□□□ -2.06
VPS50-212ENST00000476413 ZFHX2Q9C0A1 2572 aaPredicted RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 DOCK5Q9H7D0 1870 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 HECW2Q9P2P5 1572 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 SCAF11Q99590 1463 aaKnown RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 IGKV1D-43A0A0B4J1Z2 117 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 ZNF737O75373 536 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 C1QAP02745 245 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 PPBPP02775 128 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 HAAOP46952 286 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 AQP4P55087 323 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 RPL18Q07020 188 aaKnown RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 AESQ08117 197 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 GRK1Q15835 563 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 Q6ZS49 121 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 TRAPPC5Q8IUR0 188 aa2.16□□□□□ -2.06
VPS50-212ENST00000476413 LRRC25Q8N386 305 aaPredicted RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 WDR61Q9GZS3 305 aaKnown RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 MRPL27Q9P0M9 148 aaKnown RBP2.16□□□□□ -2.06
VPS50-212ENST00000476413 GGT3PA6NGU5 568 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 IGHV3-7P01780 117 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 PRM2P04554 102 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 S100A6P06703 90 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 MSMBP08118 114 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 CD79AP11912 226 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 CEBPGP53567 150 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 SNRPD2P62316 118 aaKnown RBP2.15□□□□□ -2.07
VPS50-212ENST00000476413 CCL20P78556 96 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 TMEM155Q4W5P6 130 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 FAM27BQ5VT28 67 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 ZNF676Q8N7Q3 588 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 OR8B12Q8NGG6 310 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 TP73-AS1Q9UF72 201 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 RGS12O14924 1447 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 CR1P17927 2039 aa2.15□□□□□ -2.07
VPS50-212ENST00000476413 CCDC88AQ3V6T2 1871 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 PSMD12O00232 456 aaPredicted RBP2.14□□□□□ -2.07
VPS50-212ENST00000476413 FAAHO00519 579 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 NOS1APO75052 506 aaPredicted RBP2.14□□□□□ -2.07
VPS50-212ENST00000476413 RPP14O95059 124 aaKnown RBP2.14□□□□□ -2.07
VPS50-212ENST00000476413 HLA-DRB1P01911 266 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 SERPINA7P05543 415 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 SULT1A3P0DMM9 295 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 SULT1A4P0DMN0 295 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 OMPP47874 163 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 PSME3P61289 254 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 KISS1Q15726 138 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 TMEM42Q69YG0 159 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 C20orf196Q8IYI0 205 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 C9orf163Q8N9P6 203 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 OR5B17Q8NGF7 314 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 PPP1R14BQ96C90 147 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 DOHHQ9BU89 302 aa2.14□□□□□ -2.07
VPS50-212ENST00000476413 CCDC88CQ9P219 2028 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 OR51F1A6NGY5 319 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 HMSDA8MTL9 139 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 CIAO1O76071 339 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 IGKV1-5P01602 117 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 RPL5P46777 297 aaKnown RBP2.13□□□□□ -2.07
VPS50-212ENST00000476413 RPS20P60866 119 aaKnown RBP2.13□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H4AP62805 103 aaKnown RBP2.13□□□□□ -2.07
VPS50-212ENST00000476413 KCNJ8Q15842 424 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 MRPL30Q8TCC3 161 aaKnown RBP2.13□□□□□ -2.07
VPS50-212ENST00000476413 C8orf76Q96K31 380 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 OR51V1Q9H2C8 321 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.13□□□□□ -2.07
VPS50-212ENST00000476413 HECW1Q76N89 1606 aa2.13□□□□□ -2.07
VPS50-212ENST00000476413 A0A087WUJ7 227 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 PRB1P04280 392 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 RUNX1Q01196 453 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 C9orf64Q5T6V5 341 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 LPCAT3Q6P1A2 487 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 COA5Q86WW8 74 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 PRAP1Q96NZ9 151 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 DERL1Q9BUN8 251 aa2.12□□□□□ -2.07
VPS50-212ENST00000476413 KIF24Q5T7B8 1368 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 MYH11P35749 1972 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 CUL9Q8IWT3 2517 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 SMARCA4P51532 1647 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 PQLC2LA1A4F0 135 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 SMIM9A6NGZ8 99 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 FABP5P3A8MUU1 101 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 GOLGA6L19H0YKK7 550 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 TTRP02766 147 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 SUPT4H1P63272 117 aaKnown RBP2.11□□□□□ -2.07
VPS50-212ENST00000476413 IBA57Q5T440 356 aaKnown RBP2.11□□□□□ -2.07
VPS50-212ENST00000476413 AADACL3Q5VUY0 350 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 SLC36A1Q7Z2H8 476 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 TSPAN32Q96QS1 320 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 NIPSNAP1Q9BPW8 284 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 FBXL12Q9NXK8 326 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 COL4A1P02462 1669 aa2.11□□□□□ -2.07
VPS50-212ENST00000476413 KIF13BQ9NQT8 1826 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 TRBV10-2A0A0K0K1G8 114 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms