RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 MIXL1Q9H2W2 232 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 NDUFA4L2Q9NRX3 87 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 FKBP11Q9NYL4 201 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 THYN1Q9P016 225 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 PRNDQ9UKY0 176 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 STAB2Q8WWQ8 2551 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 A8MZ25 164 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 GABARAPH6UMI1 98 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 CTDSP2O14595 271 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 RGS5O15539 181 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 CYB5BO43169 146 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 IGHV3-23P01764 117 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 HLA-AP01891 365 aaKnown RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 CD74P04233 296 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 CLEC3BP05452 202 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 SERPINE2P07093 398 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 OR13C7P0DN81 318 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 ARL3P36405 182 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 RND3P61587 244 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 MRPS10P82664 201 aaKnown RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 WT1-ASQ06250 92 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 RNASE12Q5GAN4 147 aaKnown RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 ADAMTSL5Q6ZMM2 481 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 SBSPONQ8IVN8 264 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 TMEM229BQ8NBD8 167 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 OR10W1Q8NGF6 305 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 OR5B3Q8NH48 314 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 LSM10Q969L4 123 aaKnown RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 ZNF486Q96H40 463 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 THAP7Q9BT49 309 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-221ENST00000472563 NSG2Q9Y328 171 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 OR51B2Q9Y5P1 312 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 S4R3C0 116 aa9.08□□□□□ -0.96
SYNE1-221ENST00000472563 MFSD2BA6NFX1 497 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 IGKV1-39P01597 117 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 IGKV1D-39P04432 117 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 FOLR2P14207 255 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 RPL5P46777 297 aaKnown RBP9.07□□□□□ -0.96
SYNE1-221ENST00000472563 TAS2R19P59542 299 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 SSBP1Q04837 148 aaKnown RBP9.07□□□□□ -0.96
SYNE1-221ENST00000472563 FAM106AQ4KMX7 169 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 LAX1Q8IWV1 398 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 SGPP2Q8IWX5 399 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 TERB2Q8NHR7 220 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 ZNF502Q8TBZ5 544 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 DYNC2LI1Q8TCX1 351 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 VN1R17PQ8TDU5 208 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 SEC22AQ96IW7 307 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 TMEM56Q96MV1 263 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 HINT2Q9BX68 163 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 TMEM14BQ9NUH8 114 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 C19orf73Q9NVV2 129 aa9.07□□□□□ -0.96
SYNE1-221ENST00000472563 CCDC59Q9P031 241 aaKnown RBP9.07□□□□□ -0.96
SYNE1-221ENST00000472563 KMT2CQ8NEZ4 4911 aaKnown RBP9.07□□□□□ -0.96
SYNE1-221ENST00000472563 C2orf70A6NJV1 201 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 C15orf61A6NNL5 157 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 IGHV4-30-4P0DP06 118 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 PGAM2P15259 253 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 DEFB114Q30KQ6 69 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 CD300EQ496F6 205 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-221ENST00000472563 H2BFWTQ7Z2G1 175 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 OR1L6Q8NGR2 347 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 ATP6V0BQ99437 205 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 TECRQ9NZ01 308 aaKnown RBP9.06□□□□□ -0.96
SYNE1-221ENST00000472563 RABL2AQ9UBK7 228 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-221ENST00000472563 RABL2BQ9UNT1 228 aa9.06□□□□□ -0.96
SYNE1-221ENST00000472563 F11RQ9Y624 299 aaKnown RBP9.06□□□□□ -0.96
SYNE1-221ENST00000472563 ZNF320A2RRD8 509 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 IZUMO1RA6ND01 250 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 DBX1A6NMT0 343 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 A8MWP6 167 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 CTDSPLO15194 276 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 RAB3DO95716 219 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 PI3P19957 117 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 CBLN1P23435 193 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 GPR183P32249 361 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 PIGPP57054 158 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 SLC25A24Q6NUK1 477 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 STEAP1BQ6NZ63 245 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 GTSCR1Q86UQ5 136 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 OR4D10Q8NGI6 311 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 OR4A16Q8NH70 328 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 ZFAND1Q8TCF1 268 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 SMIM4Q8WVI0 70 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 MRGPRFQ96AM1 343 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 ZC4H2Q9NQZ6 224 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 SORL1Q92673 2214 aa9.05□□□□□ -0.96
SYNE1-221ENST00000472563 TMEM213A2RRL7 107 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 ZNF785A8K8V0 405 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 NOL3O60936 208 aaKnown RBP9.04□□□□□ -0.96
SYNE1-221ENST00000472563 MFAP2P55001 183 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 HSPE1P61604 102 aaKnown RBP9.04□□□□□ -0.96
SYNE1-221ENST00000472563 MEF2DQ14814 521 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 PLET1Q6UQ28 207 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 OR1P1Q8NH06 330 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 DYNLRB2Q8TF09 96 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 DIRAS2Q96HU8 199 aa9.04□□□□□ -0.96
SYNE1-221ENST00000472563 HUWE1Q7Z6Z7 4374 aaKnown RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 C3orf85A0A1B0GTC6 90 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 H3BMQ9 156 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms