RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 Q8TCH9 128 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 RPP30P78346 268 aaKnown RBP11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 GUSBP1Q15486 140 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 CLDND2Q8NHS1 167 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 IL22RA2Q969J5 263 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 NIT2Q9NQR4 276 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 TPSG1Q9NRR2 321 aa11.28□□□□□ -0.6
CCDC88A-211ENST00000471947 IGHV3-23P01764 117 aa11.27□□□□□ -0.6
CCDC88A-211ENST00000471947 LEMD1Q68G75 181 aa11.27□□□□□ -0.6
CCDC88A-211ENST00000471947 FBXL15Q9H469 300 aa11.27□□□□□ -0.6
CCDC88A-211ENST00000471947 EAF1Q96JC9 268 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 ELOVL1Q9BW60 279 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 FOXH1O75593 365 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 LMO1P25800 156 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 ZBTB34Q8NCN2 500 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 C22orf15Q8WYQ4 148 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 HES4Q9HCC6 221 aa11.27□□□□□ -0.61
CCDC88A-211ENST00000471947 NUDT19A8MXV4 375 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 RBP4P02753 201 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SPCS3P61009 180 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 Q6ZS49 121 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 ASCL2Q99929 193 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 HSPB7Q9UBY9 170 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 TRBV6-6A0A0A6YYG2 114 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SH2D7A6NKC9 451 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 C15orf62A8K5M9 175 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 ERHP84090 104 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 KLF17Q5JT82 389 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SPNS3Q6ZMD2 512 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SLC35E3Q7Z769 313 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 NPIPB3Q92617 1050 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 CARHSP1Q9Y2V2 147 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 A1L4Q6 167 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 ACAA1P09110 424 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 LOXL3P58215 753 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 HSPE1P61604 102 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SUMO1P63165 101 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 MEF2BQ02080 365 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 MMDQ15546 238 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SEPSECSQ9HD40 501 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 CTSZQ9UBR2 303 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 SSUH2Q9Y2M2 353 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 C2CD3Q4AC94 2353 aa11.26□□□□□ -0.61
CCDC88A-211ENST00000471947 TRAV5A0A0B4J249 113 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 PPIAL4CA0A0B4J2A2 164 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 DLL1O00548 723 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 PPIAL4GP0DN37 164 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 LCN2P80188 198 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 CXCL1P09341 107 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 GNB2P62879 340 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 TMEM241Q24JQ0 296 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF788Q6ZQV5 615 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 OR1B1Q8NGR6 318 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 RITA1Q96K30 269 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 SLC35E1Q96K37 410 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 PARLQ9H300 379 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 VAX2Q9UIW0 290 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 IGHV3OR16-13A0A075B7E8 117 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 IGHV3-74A0A0B4J1X5 117 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 TMEM178BH3BS89 294 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 CT45A6P0DMU7 189 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 CT45A5P0DMU8 189 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 CT45A7P0DMV0 189 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 FLI1Q01543 452 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 BSXQ3C1V8 233 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 RAB9BQ9NP90 201 aa11.25□□□□□ -0.61
CCDC88A-211ENST00000471947 YPEL1O60688 119 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 KBTBD11O94819 623 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 APOBEC3AP31941 199 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 RND2P52198 227 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 TRAT1Q6PIZ9 186 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 MIR17HGQ75NE6 70 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 C16orf82Q7Z2V1 217 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 STPG3Q8N7X2 389 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 ZCCHC14Q8WYQ9 949 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 YPEL2Q96QA6 119 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 PIGBOS1A0A0B4J2F0 54 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 CTXND1A0A1B0GTU2 59 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF320A2RRD8 509 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 RPL8P62917 257 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 FXYD3Q14802 87 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 TEPPQ6URK8 271 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 FAM210BQ96KR6 192 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 TPPP3Q9BW30 176 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 RELBQ01201 579 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 DHRS7BQ6IAN0 325 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 Q8WTZ3 238 aa11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 RPUSD1Q9UJJ7 312 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-211ENST00000471947 LOC102723971A0A1B0GUV8 181 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 COLCA2A8K830 154 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 ZNF705GA8MUZ8 300 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 MT-ND4LP03901 98 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 RANP62826 216 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 OR5I1Q13606 314 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 TREML4Q6UXN2 200 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 CRYBG3Q68DQ2 2970 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 TRAV34A0A0B4J273 112 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 HTD2P86397 168 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 GAMTQ14353 236 aa11.23□□□□□ -0.61
CCDC88A-211ENST00000471947 GFI1BQ5VTD9 330 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms