RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PPP1R1AQ13522 171 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 IZUMO4Q1ZYL8 232 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 TMEM268Q5VZI3 342 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 THOC7Q6I9Y2 204 aaKnown RBP9.3□□□□□ -0.92
VPS13D-204ENST00000469054 MZT2BQ6NZ67 158 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 FAM219AQ8IW50 185 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 LGI3Q8N145 548 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 ZNF491Q8N8L2 437 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 KLHL30-AS1Q8NEE0 82 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 OR5B3Q8NH48 314 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 RNASE11Q8TAA1 199 aaKnown RBP9.3□□□□□ -0.92
VPS13D-204ENST00000469054 LSM10Q969L4 123 aaKnown RBP9.3□□□□□ -0.92
VPS13D-204ENST00000469054 UBE2E2Q96LR5 201 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 NDUFA4L2Q9NRX3 87 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 COA4Q9NYJ1 87 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 PRR13Q9NZ81 148 aa9.3□□□□□ -0.92
VPS13D-204ENST00000469054 A0A0B4J2A0 478 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 PIGBOS1A0A0B4J2F0 54 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 FAM240BA0A1B0GVZ2 78 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 TRGV3P03979 118 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 TCRBP04435 133 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 CRYGCP07315 174 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 AREGP15514 252 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 CTRB1P17538 263 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 PSMB6P28072 239 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 TPPP2P59282 170 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 HSPE1P61604 102 aaKnown RBP9.29□□□□□ -0.92
VPS13D-204ENST00000469054 CTRB2Q6GPI1 263 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 Q6ZRM9 215 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 C8orf86Q6ZUL3 223 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 HSD17B13Q7Z5P4 300 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-204ENST00000469054 ZNF429Q86V71 674 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 SLC35G3Q8N808 338 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 GPR146Q96CH1 333 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 HINT2Q9BX68 163 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 C20orf85Q9H1P6 137 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 GNB4Q9HAV0 340 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 SHPKQ9UHJ6 478 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 ZNF257Q9Y2Q1 563 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 TRRAPQ9Y4A5 3859 aa9.29□□□□□ -0.92
VPS13D-204ENST00000469054 IGLC7A0M8Q6 106 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 PRH1P02810 166 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 OR13C7P0DN81 318 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 ANXA7P20073 488 aaKnown RBP9.28□□□□□ -0.92
VPS13D-204ENST00000469054 RAB25P57735 213 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 ANKRD55Q3KP44 614 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 TREML4Q6UXN2 200 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 LYZL2Q7Z4W2 148 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 OR10W1Q8NGF6 305 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 C4orf3Q8WVX3 66 aa9.28□□□□□ -0.92
VPS13D-204ENST00000469054 ALX4Q9H161 411 aaPredicted RBP9.28□□□□□ -0.92
VPS13D-204ENST00000469054 TRBV9A0A0B4J1U6 114 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 A0A0G2JLM5 398 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 C9orf170A2RU37 121 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 I3L521 148 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 ST8SIA3O43173 380 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 DHFRP00374 187 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 HLA-AP01891 365 aaKnown RBP9.27□□□□□ -0.93
VPS13D-204ENST00000469054 PF4P02776 101 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 REG1AP05451 166 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 OR4E1P0C645 316 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 RHOGP84095 191 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 PRCDQ00LT1 54 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 WT1-ASQ06250 92 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 DHRS2Q13268 280 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 LRTM2Q8N967 370 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 USMG5Q96IX5 58 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 OR5B12Q96R08 314 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 PDCD10Q9BUL8 212 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-204ENST00000469054 CACNG5Q9UF02 275 aa9.27□□□□□ -0.93
VPS13D-204ENST00000469054 TET2Q6N021 2002 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-204ENST00000469054 TRAV6A0A075B6T7 132 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 C13orf42A0A1B0GVH6 325 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DUXBA0A1W2PPF3 345 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 CCL24O00175 119 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DUS4LO95620 317 aaKnown RBP9.26□□□□□ -0.93
VPS13D-204ENST00000469054 IFNA17P01571 189 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 IGHV3-11P01762 117 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 LGALS1P09382 135 aaKnown RBP9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DEFA4P12838 97 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 MYCNOSP40205 109 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 MECP2P51608 486 aaKnown RBP9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DEFA1P59665 94 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DEFA3P59666 94 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 RUNX1Q01196 453 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 KLK9Q2XQG4 91 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 DEFB136Q30KP8 78 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 AARDQ4LEZ3 155 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 C4orf46Q504U0 113 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 NMSQ5H8A3 153 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 ETV3LQ6ZN32 361 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 C19orf35Q6ZS72 473 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 LYG2Q86SG7 212 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 MRPL41Q8IXM3 137 aaKnown RBP9.26□□□□□ -0.93
VPS13D-204ENST00000469054 NECAP1Q8NC96 275 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 OR52E5Q8NH55 327 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 ENKURQ8TC29 256 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 RAX2Q96IS3 184 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 FANCD2OSQ96PS1 177 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms