RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OR10A7Q8NGE5 316 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 GPR61Q9BZJ8 451 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 SEPSECSQ9HD40 501 aaKnown RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 ELOVL5Q9NYP7 299 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 MIOXQ9UGB7 285 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 LINC00312Q9Y6C7 94 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 POLEQ07864 2286 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 PGPEP1LA6NFU8 196 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 SOX15O60248 233 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 NDUFS6O75380 124 aaKnown RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 FOSL1P15407 271 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 NBL1P41271 181 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 PRR30Q53SZ7 412 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 MOB3BQ86TA1 216 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 STPG3Q8N7X2 389 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 OR4X1Q8NH49 305 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 CCL17Q92583 94 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 OR5B12Q96R08 314 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 PYGO2Q9BRQ0 406 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 PCGF1Q9BSM1 259 aa7.31□□□□□ -1.24
SYNE1-217ENST00000466159 GAR1Q9NY12 217 aaKnown RBP7.31□□□□□ -1.24
SYNE1-217ENST00000466159 TRBV23-1A0A0A0MS06 115 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 NKX6-3A6NJ46 265 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 UPK2O00526 184 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PPP1R2P9O14990 202 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PDE6DO43924 150 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 IGFBP2P18065 325 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 CHRNA7P36544 502 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 EFNB3Q15768 340 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 RTL8BQ17RB0 113 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PYY3Q5JQD4 70 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 LINC01551Q86U37 167 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 HIST3H2BBQ8N257 126 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF114Q8NC26 417 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 SRD5A3Q9H8P0 318 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 SAP30LQ9HAJ7 183 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 KCNIP2Q9NS61 270 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PRNDQ9UKY0 176 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 TEX50A0A1B0GTY4 177 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 A0A1W2PPQ1 181 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 TGOLN2O43493 480 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 FOXH1O75593 365 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 VENTXO95231 258 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 CXorf1O96002 111 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 SAA1P0DJI8 122 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-217ENST00000466159 S100A2P29034 98 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 REG1BP48304 166 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM200BQ69YZ2 307 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 LYPD2Q6UXB3 125 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 OR10D4PQ8NGN7 298 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 ANAPC16Q96DE5 110 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 MRPL20Q9BYC9 149 aaKnown RBP7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PLEKHA3Q9HB20 300 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 JKAMPQ9P055 326 aa7.3□□□□□ -1.24
SYNE1-217ENST00000466159 PPIAL4EA0A075B759 164 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 PPIAL4DF5H284 164 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM178BH3BS89 294 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 PPIAL4FP0DN26 164 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 PRCDQ00LT1 54 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 MLANAQ16655 118 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 CDPF1Q6NVV7 123 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF833PQ6ZTB9 187 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 OR10W1Q8NGF6 305 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 H1FXQ92522 213 aaKnown RBP7.29□□□□□ -1.24
SYNE1-217ENST00000466159 NEUROG1Q92886 237 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF714Q96N38 554 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 WFIKKN1Q96NZ8 548 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 LRFN3Q9BTN0 628 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 GAL3ST2Q9H3Q3 398 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 PPIAL4AQ9Y536 164 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 YTHDF2Q9Y5A9 579 aaKnown RBP7.29□□□□□ -1.24
SYNE1-217ENST00000466159 RELNP78509 3460 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 TRBV20OR9-2A0A075B6H5 130 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 SCO2A0A1W2PP80 73 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 PPP5D1E7EU14 171 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 C1QTNF9P0C862 333 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 DIAPH2-AS1Q14236 149 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF257Q9Y2Q1 563 aa7.29□□□□□ -1.24
SYNE1-217ENST00000466159 IGKV1OR2-108A0A075B7D4 117 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 ELOA3CA0A087WX78 387 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-217ENST00000466159 F6UZH7 168 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 ACTL6BO94805 426 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 LINC00869P0C866 280 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 FABP4P15090 132 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 GATA2P23769 480 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-217ENST00000466159 GCHFRP30047 84 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 RPL29P47914 159 aaKnown RBP7.28□□□□□ -1.24
SYNE1-217ENST00000466159 FAM3BP58499 235 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-217ENST00000466159 PRR20EP86478 221 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 PRR20CP86479 221 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 PRR20DP86480 221 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 PRR20BP86481 221 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 PRR20AP86496 221 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 MEF2CQ06413 473 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-217ENST00000466159 RAB31Q13636 194 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM30BQ3MIR4 351 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 SPACA3Q8IXA5 215 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 OR4P4Q8NGL7 312 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 TMEM106BQ9NUM4 274 aa7.28□□□□□ -1.24
SYNE1-217ENST00000466159 ZNF835Q9Y2P0 537 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms