RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 RAB25P57735 213 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 AP3S2P59780 193 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 NCS1P62166 190 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 BTG2P78543 158 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 GLO1Q04760 184 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 EIF3IQ13347 325 aaKnown RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 SPCS2Q15005 226 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 ANGPT1Q15389 498 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 MAPK14Q16539 360 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 FBXL19-AS1Q494R0 122 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 IDNKQ5T6J7 187 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 FAM222AQ5U5X8 452 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 TRIQKQ629K1 86 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 LAIR2Q6ISS4 152 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 PRSS54Q6PEW0 395 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 CD200R1LQ6Q8B3 271 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 ZNF322Q6U7Q0 402 aaPredicted RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 FAM131AQ6UXB0 335 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 LRRN1Q6UXK5 716 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 LRRC28Q86X40 367 aaPredicted RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 MIR7-3HGQ8N6C7 128 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 DRAXINQ8NBI3 349 aaPredicted RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 ATP6V1C2Q8NEY4 427 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 OR4D11Q8NGI4 311 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 OR5J2Q8NH18 312 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 FAM57AQ8TBR7 257 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 ORAOV1Q8WV07 137 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 RBPMSQ93062 196 aaKnown RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 DIRAS2Q96HU8 199 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 RBP7Q96R05 134 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 GPX7Q96SL4 187 aaPredicted RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 PRSS27Q9BQR3 290 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 RTBDNQ9BSG5 229 aaPredicted RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 MROQ9BYG7 248 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 NXF2Q9GZY0 626 aaKnown RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 OR51E2Q9H255 320 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 PRORYQ9H606 182 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 FAIMQ9NVQ4 179 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 TXNL4BQ9NX01 149 aaKnown RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 ABRACLQ9P1F3 81 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 COPZ2Q9P299 210 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 DHCR7Q9UBM7 475 aaKnown RBP2.28□□□□□ -2.04
VPS41-210ENST00000462429 CKLFQ9UBR5 152 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 CYB5R1Q9UHQ9 305 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 INSIG2Q9Y5U4 225 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 IER3IP1Q9Y5U9 82 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 PLXND1Q9Y4D7 1925 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 CEP290O15078 2479 aa2.28□□□□□ -2.04
VPS41-210ENST00000462429 COL4A2P08572 1712 aa2.28□□□□□ -2.05
VPS41-210ENST00000462429 UNC13CQ8NB66 2214 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SNRNP200O75643 2136 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 CEP192Q8TEP8 1941 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TRAV27A0A087WT01 109 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TMED7-TICAM2A0A0A6YYA0 188 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TRAV1-2A0A0B4J238 106 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 LOC389332A0A1B0GUA5 103 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 A0A1W2PQL4 384 aaPredicted RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 TMEM212A6NML5 194 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 FAM25AB3EWG3 89 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 FAM25CB3EWG5 89 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 FAM25GB3EWG6 89 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 CDC42EP2O14613 210 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 TCAPO15273 167 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SULT1B1O43704 296 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 OR2A4O95047 310 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 EPPINO95925 133 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 DHFRP00374 187 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 C1QCP02747 245 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 CD5P06127 495 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 ASAH2BP0C7U1 165 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 LIMS3P0CW19 117 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 LIMS4P0CW20 117 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 NQO2P16083 231 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 HIST1H1CP16403 213 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 PYCR1P32322 319 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 FAUP35544 74 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 TGM4P49221 684 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 OR2B6P58173 313 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 KRTAP10-10P60014 251 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 RBX1P62877 108 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 CCL7P80098 99 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 MRPS10P82664 201 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 HOXC5Q00444 222 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 ATP5G2Q06055 141 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SKP2Q13309 424 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 BTN1A1Q13410 526 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 EBPQ15125 230 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 TOMM34Q15785 309 aaPredicted RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 PSG3Q16557 428 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 SP6Q3SY56 376 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 KRTAP13-2Q52LG2 175 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 HSD17B12Q53GQ0 312 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 PYDC2Q56P42 97 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 C1orf140Q5VVS0 124 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 HBMQ6B0K9 141 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 C3orf33Q6P1S2 294 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 PP632Q6XCG6 107 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 FAM231DQ6ZW35 169 aa2.27□□□□□ -2.05
VPS41-210ENST00000462429 DAZ4Q86SG3 579 aaKnown RBP2.27□□□□□ -2.05
VPS41-210ENST00000462429 TMEM156Q8N614 296 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms