RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 SULT1A4P0DMN0 295 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 PSMD8P48556 350 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 EIF2B2P49770 351 aaKnown RBP1.39□□□□□ -2.19
VCL-203ENST00000461383 HBA1P69905 142 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 MRPS15P82914 257 aaKnown RBP1.39□□□□□ -2.19
VCL-203ENST00000461383 REEP5Q00765 189 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 RPL18Q07020 188 aaKnown RBP1.39□□□□□ -2.19
VCL-203ENST00000461383 SRSF6Q13247 344 aaKnown RBP1.39□□□□□ -2.19
VCL-203ENST00000461383 KCNJ8Q15842 424 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 LPCAT3Q6P1A2 487 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 ALKAL1Q6UXT8 129 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 KTN1-AS1Q86SY8 53 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 C1orf158Q8N1D5 194 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 CHMP6Q96FZ7 201 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 CMSS1Q9BQ75 279 aaKnown RBP1.39□□□□□ -2.19
VCL-203ENST00000461383 TIMM21Q9BVV7 248 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 IL36BQ9NZH7 164 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 SLC22A13Q9Y226 551 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 COL4A2P08572 1712 aa1.39□□□□□ -2.19
VCL-203ENST00000461383 FREM1Q5H8C1 2179 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 PXDNLA1KZ92 1463 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 FLT4P35916 1363 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 SCN10AQ9Y5Y9 1956 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 IGHV1-18A0A0C4DH31 117 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 IRGMA1A4Y4 181 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 TMEM210A6NLX4 147 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 FABP5P3A8MUU1 101 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 SLC22A1O15245 554 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 ATP5HO75947 161 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 S1PR2O95136 353 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 PRM2P04554 102 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 SERPINA7P05543 415 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 GPX1P07203 203 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 HIST1H1TP22492 207 aaPredicted RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 RPL5P46777 297 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 KRTAP12-3P60328 96 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 LSM6P62312 80 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 SNRPD2P62316 118 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 MRPS25P82663 173 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 ZNF791Q3KP31 576 aaPredicted RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 TMEM42Q69YG0 159 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 TMEM86AQ8N2M4 240 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 RPP25LQ8N5L8 163 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 MRPL30Q8TCC3 161 aaKnown RBP1.38□□□□□ -2.19
VCL-203ENST00000461383 TRIM4Q9C037 500 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 VCX3BQ9H321 246 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 C8orf4Q9NR00 106 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 CISHQ9NSE2 258 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 GLTPQ9NZD2 209 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 PRO2289Q9P1D8 64 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 ZNF532Q9HCE3 1301 aa1.38□□□□□ -2.19
VCL-203ENST00000461383 DENND4BO75064 1496 aaPredicted RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 DHX57Q6P158 1386 aaKnown RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 OR4C46A6NHA9 309 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 FAAHO00519 579 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 IGHV3-7P01780 117 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 C1QAP02745 245 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 TTRP02766 147 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 DEFA4P12838 97 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 CCL5P13501 91 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 NFYAP23511 347 aaPredicted RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BOP23527 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BBP33778 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BDP58876 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 DEFA1P59665 94 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BCP62807 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 RANP62826 216 aaKnown RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 CCL20P78556 96 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 DEFB103AP81534 67 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 EDDM3AQ14507 147 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST2H2BEQ16778 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 AKIRIN2Q53H80 203 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 RPL22L1Q6P5R6 122 aaKnown RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 Q8NDZ9 215 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BHQ93079 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 BORCS7Q96B45 105 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 KLF6Q99612 283 aaPredicted RBP1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BNQ99877 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 HIST1H2BMQ99879 126 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 OR8D2Q9GZM6 311 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 CCDC90BQ9GZT6 254 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 CHST6Q9GZX3 395 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 CST9LQ9H4G1 147 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 DOK5Q9P104 306 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 MED12LQ86YW9 2145 aa1.37□□□□□ -2.19
VCL-203ENST00000461383 PLXND1Q9Y4D7 1925 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 TRAV9-1A0A075B6T8 112 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 SMIM9A6NGZ8 99 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 ZNF860A6NHJ4 632 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 SIGLEC16A6NMB1 481 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 ORC5O43913 435 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 PGLYRP1O75594 196 aaPredicted RBP1.36□□□□□ -2.19
VCL-203ENST00000461383 TRGC1P0CF51 173 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 RPS4Y1P22090 263 aaKnown RBP1.36□□□□□ -2.19
VCL-203ENST00000461383 CCL7P80098 99 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 WRNQ14191 1432 aaPredicted RBP eCLIP1.36□□□□□ -2.19
VCL-203ENST00000461383 CDK10Q15131 360 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 NDUFA5Q16718 116 aa1.36□□□□□ -2.19
VCL-203ENST00000461383 KRTAP6-3Q3LI67 103 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms