RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PFN1P07737 140 aaKnown RBP12.28□□□□□ -0.44
LDLR-202ENST00000455727 NPPCP23582 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 EFNB3Q15768 340 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 TMEM177Q53S58 311 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 C2orf83Q53S99 150 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 SPNS3Q6ZMD2 512 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 C16orf82Q7Z2V1 217 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 TNCP24821 2201 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 H0YJW9 148 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BKO60814 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 TRGC2P03986 189 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BJP06899 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 ARL14EPLP0DKL9 152 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 MYOD1P15172 320 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BOP23527 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BBP33778 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BDP58876 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BCP62807 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PRR20EP86478 221 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PRR20CP86479 221 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PRR20DP86480 221 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PRR20BP86481 221 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PRR20AP86496 221 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST2H2BEQ16778 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.28□□□□□ -0.44
LDLR-202ENST00000455727 STPG3Q8N7X2 389 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BHQ93079 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BNQ99877 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HIST1H2BMQ99879 126 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 HINT2Q9BX68 163 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 MRPL20Q9BYC9 149 aaKnown RBP12.28□□□□□ -0.44
LDLR-202ENST00000455727 DYNLRB1Q9NP97 96 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 NIT2Q9NQR4 276 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 DOK5Q9P104 306 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 PIEZO2Q9H5I5 2752 aa12.28□□□□□ -0.44
LDLR-202ENST00000455727 FABP1P07148 127 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 SAA1P0DJI8 122 aaPredicted RBP12.27□□□□□ -0.44
LDLR-202ENST00000455727 APOBEC3AP31941 199 aaPredicted RBP12.27□□□□□ -0.44
LDLR-202ENST00000455727 RHOBP62745 196 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 LYPD2Q6UXB3 125 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 OR1L8Q8NGR8 309 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 ABHD5Q8WTS1 349 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 TMEM186Q96B77 213 aa12.27□□□□□ -0.44
LDLR-202ENST00000455727 A0A087X0M5 115 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 A0A1B0GX30 115 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 INS-IGF2F8WCM5 200 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 H7BYZ3 331 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 CDX1P47902 265 aaPredicted RBP12.27□□□□□ -0.45
LDLR-202ENST00000455727 CST9LP1Q5W188 147 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 TMEM144Q7Z5S9 345 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 OR51G1Q8NGK1 321 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 SSMEM1Q8WWF3 244 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 H1FXQ92522 213 aaKnown RBP12.27□□□□□ -0.45
LDLR-202ENST00000455727 GSN-AS1Q9NRJ2 163 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 ROS1P08922 2347 aa12.27□□□□□ -0.45
LDLR-202ENST00000455727 ARFGEF3Q5TH69 2177 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 DVL1O14640 695 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 CLN5O75503 358 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 S100PP25815 95 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 ZNF137PP52743 207 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 DLX6P56179 175 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 GNB1P62873 340 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 OR4A5Q8NH83 315 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 HARBI1Q96MB7 349 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 CTSZQ9UBR2 303 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 B9A039 149 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 PHOX2AO14813 284 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 CD99P14209 185 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 LOXP28300 417 aaPredicted RBP12.26□□□□□ -0.45
LDLR-202ENST00000455727 ATP5G3P48201 142 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 NDUFA6P56556 154 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 PDPNQ86YL7 162 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 OR4C13Q8NGP0 309 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 ST6GALNAC6Q969X2 333 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 FLYWCH2Q96CP2 140 aaKnown RBP12.26□□□□□ -0.45
LDLR-202ENST00000455727 OR5B12Q96R08 314 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 TMEM204Q9BSN7 226 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 SRD5A3Q9H8P0 318 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 SLC45A2Q9UMX9 530 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 MSRB2Q9Y3D2 182 aa12.26□□□□□ -0.45
LDLR-202ENST00000455727 LINC00587B1AMM8 73 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 FAM87AP0C7U9 286 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 LINC00869P0C866 280 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 USF1P22415 310 aaPredicted RBP12.25□□□□□ -0.45
LDLR-202ENST00000455727 UBE2G2P60604 165 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 TMEM155Q4W5P6 130 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 OR10X1Q8NGY0 326 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 VSTM2AQ8TAG5 236 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 NABP2Q9BQ15 211 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 NDUFA4L2Q9NRX3 87 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 POLEQ07864 2286 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 CD3EP07766 207 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 RNASE2P10153 161 aaKnown RBP12.25□□□□□ -0.45
LDLR-202ENST00000455727 IGFBP2P18065 325 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 GALR1P47211 349 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 RPL8P62917 257 aaKnown RBP12.25□□□□□ -0.45
LDLR-202ENST00000455727 TMEM167AQ8TBQ9 72 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 PCGF1Q9BSM1 259 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 COMMD5Q9GZQ3 224 aa12.25□□□□□ -0.45
LDLR-202ENST00000455727 OR51M1Q9H341 326 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms