RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 DRAM1Q8N682 238 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 C1orf162Q8NEQ5 155 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 CLDND2Q8NHS1 167 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FOXA2Q9Y261 457 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 CFDP00746 253 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 NSUN5P1Q3KNT7 163 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 ABLIM2Q6H8Q1 611 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 PRB3Q04118 309 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 C7orf77A4D0Y5 90 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 TMEM30BQ3MIR4 351 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 Q96M66 194 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 TCF24Q7RTU0 167 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 TNFRSF18Q9Y5U5 241 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 C1QCP02747 245 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 C1QTNF12Q5T7M4 302 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 SRSF12Q8WXF0 261 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 CDC42EP3Q9UKI2 254 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A10PA6NDY2 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A18PA6NE21 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A16PA6NEW6 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A20PA6NIJ5 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A8PA6NJQ4 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A7PA6NKC0 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A22PA8MWA6 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A12PA8MX19 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A5PA8MXJ8 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A23PA8MXZ1 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 CD1AP06126 327 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A15PP0C7V4 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A13PP0C7W8 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A14PP0C7W9 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A24PP0C7X0 464 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 CACNG7P62955 275 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 PKIAP61925 76 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 IRF3Q14653 427 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM57AQ8TBR7 257 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 LINC01587Q99440 93 aa10.25□□□□□ -0.77
CCDC88A-207ENST00000436346 M0R381 172 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 ZG16O60844 167 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 DNM1P46Q6ZS02 220 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 C5orf66Q9H5L9 145 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM27E3Q08E93 113 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 NPFFR1Q9GZQ6 430 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 DPH3P1Q9H4G8 78 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 KCNE5Q9UJ90 142 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 SEC11BP0C7V7 166 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 MEGF10Q96KG7 1140 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 HSPB9Q9BQS6 159 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 JPT1Q9UK76 154 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 COLCA1Q6ZS62 124 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 TMEM54Q969K7 222 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 PGPA6NDG6 321 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 H7C1H1 209 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 OR10AG1Q8NH19 301 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 IGHV3OR16-8A0A075B7F1 116 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF383Q8NA42 475 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 FOXC2Q99958 501 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 C17orf51A8MQB3 221 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 PROB1E7EW31 1015 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 TM4SF5O14894 197 aa10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 TAF15Q92804 592 aaKnown RBP eCLIP10.24□□□□□ -0.77
CCDC88A-207ENST00000436346 TRGV2A0A075B6R0 118 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 TCRBV4S1A1TA0A5B7 111 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 GLRXP35754 106 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 JMJD8Q96S16 334 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 C1QL1O75973 258 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 SFRP2Q96HF1 295 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 FBXL7Q9UJT9 491 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 NEU4Q8WWR8 484 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 M0QZK8 103 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 GGCTO75223 188 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 ZIC4Q8N9L1 334 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 OR13C6PQ8NH95 151 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 MRPL32Q9BYC8 188 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 MRPL18Q9H0U6 180 aaKnown RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 TRBV20OR9-2A0A075B6H5 130 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 ZIC3O60481 467 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 PEMTQ9UBM1 199 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 SIRT4Q9Y6E7 314 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 IGLV1-36A0A0B4J1U3 117 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 TRBV5-5A0A0J9YX44 114 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 MUC1P15941 1255 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 PPP1R27Q86WC6 154 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 TCF19Q9Y242 345 aa10.23□□□□□ -0.77
CCDC88A-207ENST00000436346 AMELYQ99218 206 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 SMIM6P0DI80 62 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 ASPHD2Q6ICH7 369 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 C8orf82Q6P1X6 216 aaPredicted RBP10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 SEMA5BQ9P283 1151 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 GZMMP51124 257 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 HSPE1P61604 102 aaKnown RBP10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 ZNF79Q15937 498 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 CLEC19AQ6UXS0 136 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 PGPEP1Q9NXJ5 209 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 CPAMD8Q8IZJ3 1885 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 FAM90A26D6RGX4 464 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 LDLRAD2Q5SZI1 272 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 SPSB2Q99619 263 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 HLA-DRB1P01911 266 aa10.22□□□□□ -0.77
CCDC88A-207ENST00000436346 IFT22Q9H7X7 185 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms