RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZNF491Q8N8L2 437 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 DUSP18Q8NEJ0 188 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 OR4X2Q8NGF9 303 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 OR5M8Q8NGP6 311 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 ABHD5Q8WTS1 349 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 CASTOR1Q8WTX7 329 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 LSM10Q969L4 123 aaKnown RBP9.66□□□□□ -0.86
USP40-205ENST00000430158 TSC22D3Q99576 134 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 SPIN2AQ99865 258 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 SPIN2BQ9BPZ2 258 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 SRSF8Q9BRL6 282 aaKnown RBP9.66□□□□□ -0.86
USP40-205ENST00000430158 C20orf85Q9H1P6 137 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 ZFP57Q9NU63 452 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 PRNDQ9UKY0 176 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 ZNF257Q9Y2Q1 563 aa9.66□□□□□ -0.86
USP40-205ENST00000430158 TSSC4Q9Y5U2 329 aaPredicted RBP9.66□□□□□ -0.86
USP40-205ENST00000430158 TRBV9A0A0B4J1U6 114 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 A0A0B4J2A0 478 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 A0A1W2PN81 502 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 NPIPB5A8MRT5 1133 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 H3BUA1 57 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 ACTL6BO94805 426 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 OR4E1P0C645 316 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 APELAP0DMC3 54 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 CTRB1P17538 263 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 CHRNA7P36544 502 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 CDX1P47902 265 aaPredicted RBP9.65□□□□□ -0.86
USP40-205ENST00000430158 WT1-ASQ06250 92 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 DHRS2Q13268 280 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 CTRB2Q6GPI1 263 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 MZT2BQ6NZ67 158 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 C19orf35Q6ZS72 473 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 LYZL2Q7Z4W2 148 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 NRARPQ7Z6K4 114 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 FAM219AQ8IW50 185 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 SLC35G3Q8N808 338 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 OR10W1Q8NGF6 305 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 OR1L8Q8NGR8 309 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 OR5B3Q8NH48 314 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 FANCD2OSQ96PS1 177 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 QTRT1Q9BXR0 403 aaKnown RBP9.65□□□□□ -0.86
USP40-205ENST00000430158 SHPKQ9UHJ6 478 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 OR51B2Q9Y5P1 312 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 DMRT1Q9Y5R6 373 aa9.65□□□□□ -0.86
USP40-205ENST00000430158 FAM240BA0A1B0GVZ2 78 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 SNAPC5O75971 98 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 ATG12O94817 140 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 TRAPPC2P0DI81 140 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 TRAPPC2BP0DI82 140 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 VAMP1P23763 118 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 PSMB6P28072 239 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 HSPE1P61604 102 aaKnown RBP9.64□□□□□ -0.87
USP40-205ENST00000430158 SRPXP78539 464 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 PDLIM3Q53GG5 364 aaPredicted RBP9.64□□□□□ -0.87
USP40-205ENST00000430158 CXorf66Q5JRM2 361 aaPredicted RBP9.64□□□□□ -0.87
USP40-205ENST00000430158 PRR31Q5SQ13 230 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 ETV3LQ6ZN32 361 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 LYG2Q86SG7 212 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 ZNF695Q8IW36 515 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 LGI3Q8N145 548 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 FYTTD1Q96QD9 318 aaKnown RBP9.64□□□□□ -0.87
USP40-205ENST00000430158 COMMD5Q9GZQ3 224 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 NUDT15Q9NV35 164 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 FKBP11Q9NYL4 201 aa9.64□□□□□ -0.87
USP40-205ENST00000430158 TRAV6A0A075B6T7 132 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 DUXBA0A1W2PPF3 345 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 INS-IGF2F8WCM5 200 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 I3L521 148 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 ST8SIA3O43173 380 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 PITX3O75364 302 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 DUS4LO95620 317 aaKnown RBP9.63□□□□□ -0.87
USP40-205ENST00000430158 TSPAN15O95858 294 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 H2AFB2P0C5Z0 115 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 PF4V1P10720 104 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 ANXA3P12429 323 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 SPNP16150 400 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 AKR1C2P52895 323 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 MFAP2P55001 183 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 PRCDQ00LT1 54 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 RUNX1Q01196 453 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 NSUN5P1Q3KNT7 163 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 THOC7Q6I9Y2 204 aaKnown RBP9.63□□□□□ -0.87
USP40-205ENST00000430158 OR4A16Q8NH70 328 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 MITD1Q8WV92 249 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 RRNAD1Q96FB5 475 aaKnown RBP9.63□□□□□ -0.87
USP40-205ENST00000430158 UBE2E2Q96LR5 201 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 MS4A10Q96PG2 267 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 GNB4Q9HAV0 340 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 COA4Q9NYJ1 87 aa9.63□□□□□ -0.87
USP40-205ENST00000430158 A0A1W2PRX2 142 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 HLA-AP01891 365 aaKnown RBP9.62□□□□□ -0.87
USP40-205ENST00000430158 PRH1P02810 166 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 PVRIGQ6DKI7 326 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 OR2C3Q8N628 320 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 OR52B4Q8NGK2 314 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 OR52E5Q8NH55 327 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 PHB2Q99623 299 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 MARVELD1Q9BSK0 173 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 SLA2Q9H6Q3 261 aa9.62□□□□□ -0.87
USP40-205ENST00000430158 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms