RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TRIM49D1C9J1S8 452 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 M0R036 132 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ATP6V0E1O15342 81 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 SNAP29O95721 258 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHV1-8P0DP01 117 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RAB5AP20339 215 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 GNG11P61952 73 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DR1Q01658 176 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TNFRSF9Q07011 255 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM42Q69YG0 159 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 NCBP2-AS2Q69YL0 99 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 IL34Q6ZMJ4 242 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZRM9 215 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 PRSS48Q7RTY5 328 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DCXRQ7Z4W1 244 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 PQLC3Q8N755 202 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 THAP8Q8NA92 274 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ANGPTL6Q8NI99 470 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RXFP4Q8TDU9 374 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 SGK494Q96LW2 274 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 IL4I1Q96RQ9 567 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 FUT9Q9Y231 359 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 KCNIP3Q9Y2W7 256 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ADGRG4Q8IZF6 3080 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 MYH15Q9Y2K3 1946 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DNAH3Q8TD57 4116 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DAPL1A0PJW8 107 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 MSGN1A6NI15 193 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RGS16O15492 202 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RBFOX2O43251 390 aaKnown RBP eCLIP2.07□□□□□ -2.082e-7■■■■■ 40.6
CCDC88A-205ENST00000426576 TNFSF12O43508 249 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 FCN3O75636 299 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 C2P06681 752 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 GNAO1P09471 354 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RAB5CP51148 216 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC00205P59089 165 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 CYCSP99999 105 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 HGFACQ04756 655 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OGFRL1Q5TC84 451 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 SIGLEC15Q6ZMC9 328 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 KCTD9Q7L273 389 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OR11H7Q8NGC8 314 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OR4A4PQ8NGN8 299 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TYMSOSQ8TAI1 123 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 MOGAT1Q96PD6 335 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM204Q9BSN7 226 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ALX4Q9H161 411 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 GLIPR2Q9H4G4 154 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF286AQ9HBT8 521 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 CYTL1Q9NRR1 136 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 COPZ2Q9P299 210 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 SS18L2Q9UHA2 77 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 GNG8Q9UK08 70 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 PXMP4Q9Y6I8 212 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF236Q9UL36 1845 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1B0GUL6 1792 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A087WWC5 75 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1W2PPK0 400 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1W2PQD3 144 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TCRBV5S1A1TA0A578 114 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 METTL15A6NJ78 407 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 UBDO15205 165 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 HIST1H1CP16403 213 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 YAP1P46937 504 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TNP2Q05952 138 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF56Q15929 161 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 GOLGA7Q7Z5G4 137 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DYNAPQ8N1N2 210 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OR13C9Q8NGT0 318 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 Q8TAT8 98 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 BAALCQ8WXS3 180 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM18Q96B42 140 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM70Q9BUB7 260 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OR52A1Q9UKL2 312 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 HHLA2Q9UM44 414 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 C14orf166Q9Y224 244 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 DSPP15924 2871 aaKnown RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1B0GWA3 101 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 KNCNA6PVL3 124 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 CORTO00230 105 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHV2-70P01814 119 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 CKS1BP61024 79 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 RRAS2P62070 204 aaPredicted RBP2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 PSG9Q00887 426 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 SWI5Q1ZZU3 235 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 COMMD7Q86VX2 200 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 OR13C2Q8NGS9 318 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM239Q8WW34 195 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ARHGAP5-AS1Q96IT6 56 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF681Q96N22 645 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 NIPSNAP1Q9BPW8 284 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 CMTM6Q9NX76 183 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 MBD2Q9UBB5 411 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 KLK12Q9UKR0 248 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 MXRA5Q9NR99 2828 aa2.07□□□□□ -2.08
CCDC88A-205ENST00000426576 ADAMTSL1Q8N6G6 1762 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 GREB1LQ9C091 1923 aaPredicted RBP2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 MGAMO43451 1857 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 CROCCQ5TZA2 2017 aa2.06□□□□□ -2.08
CCDC88A-205ENST00000426576 TRGV11A0A075B6L2 103 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms