RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZANQ9Y493 2812 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 CA2P00918 260 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 MYOD1P15172 320 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 CXCL2P19875 107 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 LY6EQ16553 131 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 PDLIM3Q53GG5 364 aaPredicted RBP13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 IL17RELQ6ZVW7 336 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 TMUB2Q71RG4 321 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 BCL6BQ8N143 479 aaPredicted RBP13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 ABHD5Q8WTS1 349 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 TNCP24821 2201 aa13.67□□□□□ -0.22
CCDC28B-202ENST00000421922 MDFIC2A0A1B0GVS7 189 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 RNF222A6NCQ9 220 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 FAM24AA6NFZ4 105 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 KCNAB3O43448 404 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 SCAF4O95104 1147 aaKnown RBP13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 IFNA10P01566 189 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 HKR1P10072 659 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 S100A11P31949 105 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 COMPP49747 757 aaPredicted RBP13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 ERHP84090 104 aaKnown RBP13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 PJVKQ0ZLH3 352 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 LGALSLQ3ZCW2 172 aaPredicted RBP13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 TMEM219Q86XT9 240 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 KCNRGQ8N5I3 272 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 OR5R1Q8NH85 324 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 RBM14Q96PK6 669 aaKnown RBP13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 TLN2Q9Y4G6 2542 aa13.66□□□□□ -0.22
CCDC28B-202ENST00000421922 KRTAP1-1Q07627 177 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 BAXQ07812 192 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 TMEM267Q0VDI3 215 aaPredicted RBP13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 C10orf55Q5SWW7 151 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 C16orf82Q7Z2V1 217 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 C11orf1Q9H5F2 150 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 NDUFA4L2Q9NRX3 87 aa13.65□□□□□ -0.22
CCDC28B-202ENST00000421922 IGSF23A1L1A6 192 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 MSGN1A6NI15 193 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 OR8U8P0C7N1 319 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 SNCAP37840 140 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 PAX9P55771 341 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 RAB11AP62491 216 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 EWSR1Q01844 656 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 FBLN7Q53RD9 439 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 LAMTOR1Q6IAA8 161 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 RBMS3Q6XE24 437 aaKnown RBP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 TMEM252Q8N6L7 170 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 SRSF12Q8WXF0 261 aaKnown RBP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 ARPC5LQ9BPX5 153 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 PLSCR3Q9NRY6 295 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 U3KQ87 197 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 M0QZK8 103 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 FGF16O43320 207 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 BCL2L11O43521 198 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 TMEM50AO95807 157 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 CD99P14209 185 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 HTR2BP41595 481 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 VDAC2P45880 294 aaPredicted RBP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 SULT1A1P50225 295 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 SUB1P53999 127 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 HBG1P69891 147 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 HBG2P69892 147 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 FXYD3Q14802 87 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 OPCMLQ14982 345 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 HSD17B13Q7Z5P4 300 aaPredicted RBP13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 Q8N9W7 124 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 SLC24A4Q8NFF2 622 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 ARPC1AQ92747 370 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 BOLA1Q9Y3E2 137 aa13.64□□□□□ -0.23
CCDC28B-202ENST00000421922 A6NDX4 124 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 FCN1O00602 326 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 TAAR5O14804 337 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 CST7O76096 145 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 HLA-DRB1P01911 266 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 METTL15P1P0C7V9 234 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 NPY1RP25929 384 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 LILRB2Q8N423 598 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 OR1S2Q8NGQ3 325 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 PIFOQ8TCI5 191 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 SSMEM1Q8WWF3 244 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 SMIM3Q9BZL3 60 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 TMEM160Q9NX00 188 aa13.63□□□□□ -0.23
CCDC28B-202ENST00000421922 ACANP16112 2415 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 IGHV4-59P01825 116 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 IFNA4P05014 189 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 OR13C7P0DN81 318 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 FOSL1P15407 271 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 MRGPRG-AS1Q2M3A8 158 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 OR8G2PQ6IF36 304 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 ZNF562Q6V9R5 426 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 Q6YL49 198 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 TMEM217Q8N7C4 229 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 C5orf56Q8N8D9 126 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 OR10W1Q8NGF6 305 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 OR4C12Q96R67 309 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 SRSF8Q9BRL6 282 aaKnown RBP13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 ZNF471Q9BX82 626 aaPredicted RBP13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 TNFRSF19Q9NS68 423 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 FBXL17Q9UF56 701 aa13.62□□□□□ -0.23
CCDC28B-202ENST00000421922 PLXNB1O43157 2135 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 IER3P46695 156 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms