RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TRAV9-2A0A087WT02 112 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 PRRT4C9JH25 899 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 MGST3O14880 152 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 FGF12P61328 243 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 FBXW9Q5XUX1 488 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 A0A0G2JLM5 398 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CDC42EP2O14613 210 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 SMIM8Q96KF7 97 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 ICAM4Q14773 271 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 TMEM252Q8N6L7 170 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CCL13Q99616 98 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CALYQ9NYX4 217 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNHIT1O43257 154 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 PTP4A3O75365 173 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 DCAF12L2Q5VW00 463 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 VSIG8P0DPA2 414 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 GTF3AQ92664 365 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CHODLQ9H9P2 273 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 NDUFA2O43678 99 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 LINC01559Q495D7 138 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 GDF15Q99988 308 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 H3BTX0 84 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 GZMBP10144 247 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CCL19Q99731 98 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 PAX4O43316 350 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CEACAM5P06731 702 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 TMEM30BQ3MIR4 351 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 ANAPC10Q9UM13 185 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 MOSP00540 346 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 FGFRL1Q8N441 504 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 HCSTQ9UBK5 93 aa11.43□□□□□ -0.58
CCDC88A-204ENST00000413716 CCL21O00585 134 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 SELENOHQ8IZQ5 122 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 NCR2O95944 276 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 SIGLEC14Q08ET2 396 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 INAFM2P0DMQ5 153 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 A0A087WWC5 75 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 MPV17P39210 176 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNF79Q15937 498 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 WNT2BQ93097 391 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 TRBV5-4A0A0C4DH59 114 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 C2orf68Q2NKX9 166 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 ADARB2-AS1A8MUL3 147 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 H3BMM0 161 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 PNKDQ8N490 385 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 SPANXCQ9NY87 97 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 FREM1Q5H8C1 2179 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 CLEC7AQ9BXN2 247 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 NRN1Q9NPD7 142 aa11.42□□□□□ -0.58
CCDC88A-204ENST00000413716 IL6RP08887 468 aaPredicted RBP11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 HS3ST3B1Q9Y662 390 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 OR2H2O95918 312 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 CCL8P80075 99 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 UNC119Q13432 240 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 CYP2G1PQ6ZSU1 146 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 CD7P09564 240 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 ABHD17AQ96GS6 310 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 P2RY6Q15077 328 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 NDUFAF3Q9BU61 184 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 IGKV1D-42A0A075B6H8 117 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 A0A1W2PQD3 144 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 C1orf122Q6ZSJ8 110 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 CHCHD1Q96BP2 118 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 SPTY2D1-AS1A0A0U1RR47 76 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 ARHGAP21Q5T5U3 1957 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 LAGE3Q14657 143 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 LY6EQ16553 131 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 IDI2-AS1Q9NZ38 188 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 SBF1O95248 1867 aa11.41□□□□□ -0.58
CCDC88A-204ENST00000413716 TRGV3P03979 118 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 NPC2P61916 151 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 C17orf99Q6UX52 265 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 UBE2DNLQ8IWF7 75 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 APCDD1LQ8NCL9 501 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 TNFRSF12AQ9NP84 129 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 TPTE2P1Q5T6R2 138 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 DDX60LQ5H9U9 1706 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 IGHV3-64A0A075B6Q5 118 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 TEX45Q8NA69 505 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 LINC01549A6NIU2 74 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 PGLYRP1O75594 196 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 DRAM1Q8N682 238 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 CT55Q8WUE5 264 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 MRPS18BQ9Y676 258 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 PTPRFP10586 1907 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 IGHV5-51A0A0C4DH38 117 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 NTN1O95631 604 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 GTSCR1Q86UQ5 136 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 KCPQ6ZWJ8 1503 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 SCTP09683 121 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 TMEM91Q6ZNR0 172 aa11.4□□□□□ -0.58
CCDC88A-204ENST00000413716 NDUFC2O95298 119 aa11.4□□□□□ -0.59
CCDC88A-204ENST00000413716 UBE2WQ96B02 151 aa11.4□□□□□ -0.59
CCDC88A-204ENST00000413716 TCTEX1D4Q5JR98 221 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 QSER1Q2KHR3 1735 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 C21orf140B9A014 251 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 FXYD1O00168 92 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 GATAD1Q8WUU5 269 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 ASCL2Q99929 193 aa11.39□□□□□ -0.59
CCDC88A-204ENST00000413716 ATG4DQ86TL0 474 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms