RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RPL23P62829 140 aaKnown RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 ERG28Q9UKR5 140 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 ZNF831Q5JPB2 1677 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 IFITM1P13164 125 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 C9orf153Q5TBE3 101 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 ZNF703Q9H7S9 590 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-206ENST00000409809 CADM4Q8NFZ8 388 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 ASCL2Q99929 193 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 PLXNA2O75051 1894 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 COL5A3P25940 1745 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-206ENST00000409809 ARHGAP32A7KAX9 2087 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 TMSB15BA0A087X1C1 80 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 RAMP1O60894 148 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 SNRPD3P62318 126 aaKnown RBP11.05□□□□□ -0.64
COL6A3-206ENST00000409809 SOSTQ9BQB4 213 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 JPT1Q9UK76 154 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 LCTP09848 1927 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 PPIAL4EA0A075B759 164 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 PPIAL4FP0DN26 164 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 CXorf66Q5JRM2 361 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-206ENST00000409809 C1QL3Q5VWW1 255 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 MS4A4AQ96JQ5 239 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 TM2D1Q9BX74 207 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 PPIAL4AQ9Y536 164 aa11.05□□□□□ -0.64
COL6A3-206ENST00000409809 M0R2P5 195 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 TNFRSF6BO95407 300 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 COX5BP10606 129 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 CDKN1BP46527 198 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 KIAA1644Q3SXP7 199 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 WFDC5Q8TCV5 224 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 IGHV3-20A0A0C4DH32 117 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 TMEM258P61165 79 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 KRTCAP3Q53RY4 240 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 IGHV3-43A0A0B4J1X8 118 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 RNF222A6NCQ9 220 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 IGHV3-43DP0DP04 118 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 PPDPFLQ8WWR9 84 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 PRDM14Q9GZV8 571 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 CHTOPQ9Y3Y2 248 aaKnown RBP11.04□□□□□ -0.64
COL6A3-206ENST00000409809 A0A1W2PRE2 83 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 OR5AN1Q8NGI8 311 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 FBLN5Q9UBX5 448 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 SIT1Q9Y3P8 196 aa11.04□□□□□ -0.64
COL6A3-206ENST00000409809 WISP3O95389 354 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 SNRPCP09234 159 aaKnown RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 SRFP11831 508 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 LEPP41159 167 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 SSPNQ14714 243 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 KLF17Q5JT82 389 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 ATRAIDQ6UW56 229 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 PLAC1Q9HBJ0 212 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 EDIL3O43854 480 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 IFI27P40305 119 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 RSPO2Q6UXX9 243 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 TRBV6-7A0A0A0MS04 114 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 IGHV2-70P01814 119 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 GOLT1AQ6ZVE7 132 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 COX14Q96I36 57 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 TMEM14DPA8MWL7 114 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 NPFFO15130 113 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 NDUFC2O95298 119 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 GPX1P07203 203 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 CXorf67Q86X51 503 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-206ENST00000409809 TMEM86BQ8N661 226 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 TSKUQ8WUA8 353 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 RLN3Q8WXF3 142 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 COQ2Q96H96 371 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 ADMP35318 185 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 SIGLEC14Q08ET2 396 aa11.03□□□□□ -0.64
COL6A3-206ENST00000409809 WNT2BQ93097 391 aa11.02□□□□□ -0.64
COL6A3-206ENST00000409809 CHAC1Q9BUX1 264 aa11.02□□□□□ -0.64
COL6A3-206ENST00000409809 UPK3AO75631 287 aa11.02□□□□□ -0.64
COL6A3-206ENST00000409809 DYNLRB2Q8TF09 96 aa11.02□□□□□ -0.64
COL6A3-206ENST00000409809 FAM106CPP0CH98 169 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 TIMP3P35625 211 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 ZNF56Q15929 161 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 Q5BKY6 102 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 FAM159AQ6UWV7 190 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 EDA2RQ9HAV5 297 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 TRPM7Q96QT4 1865 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 THY1P04216 161 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 PSG6Q00889 435 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 LOXL4Q96JB6 756 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 TCF19Q9Y242 345 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 COL6A6A6NMZ7 2263 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 PLXNA3P51805 1871 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 SPTY2D1-AS1A0A0U1RR47 76 aa11.02□□□□□ -0.65
COL6A3-206ENST00000409809 GPR6P46095 362 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-206ENST00000409809 NDUFS6O75380 124 aaKnown RBP11.01□□□□□ -0.65
COL6A3-206ENST00000409809 DDB2Q92466 427 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 TMEM126AQ9H061 195 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 NEUROG3Q9Y4Z2 214 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 CEACAM1P13688 526 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 IL11P20809 199 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 EPDR1Q9UM22 224 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 CRPP02741 224 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 PGFP49763 221 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 CD300EQ496F6 205 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-206ENST00000409809 LIMS2Q7Z4I7 341 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 RPRMLQ8N4K4 120 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms