RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FSHBP01225 129 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 IGLV1-47P01700 117 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 SLC38A11Q08AI6 406 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 ARL16Q0P5N6 197 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 SPSB3Q6PJ21 355 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 BRD3OSQ6XYD6 125 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 THNSL2Q86YJ6 484 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 C8orf31Q8N9H6 132 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 CLRN3Q8NCR9 226 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 ZNF439Q8NDP4 499 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 ZNF596Q8TC21 504 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 DTD1Q8TEA8 209 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 ADTRPQ96IZ2 230 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 ZNRD1Q9P1U0 126 aa10.84□□□□□ -0.67
LIMS1-204ENST00000409441 HIVEP2P31629 2446 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 ODF3BA8MYP8 253 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 NPFFO15130 113 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 SLC31A2O15432 143 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 HNF1AP20823 631 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 SRP14P37108 136 aaKnown RBP10.83□□□□□ -0.68
LIMS1-204ENST00000409441 THBS3P49746 956 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 PPT1P50897 306 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 LGALS4P56470 323 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 BPIFB3P59826 476 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 ERVK-16P61578 105 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 RUSC1-AS1Q66K80 236 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 BEND2Q8NDZ0 799 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 OR52E5Q8NH55 327 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 DDB2Q92466 427 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 PINX1Q96BK5 328 aaKnown RBP10.83□□□□□ -0.68
LIMS1-204ENST00000409441 S1PR3Q99500 378 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 WDR61Q9GZS3 305 aaKnown RBP10.83□□□□□ -0.68
LIMS1-204ENST00000409441 SLC35B3Q9H1N7 401 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 RFNGQ9Y644 331 aa10.83□□□□□ -0.68
LIMS1-204ENST00000409441 SONP18583 2426 aaKnown RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 BUB1B-PAK6H3BSN5 160 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 NUPL2O15504 423 aaKnown RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 FCGR3BO75015 233 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 NQO2P16083 231 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 NPBWR1P48145 328 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 PDLIM3Q53GG5 364 aaPredicted RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 SLC25A48Q6ZT89 311 aaKnown RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 CENPVQ7Z7K6 275 aaPredicted RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 LINC00311Q8N616 119 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 OR4P4Q8NGL7 312 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 OR10X1Q8NGY0 326 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 OR4S2Q8NH73 311 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 OR4C12Q96R67 309 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 TMEM147Q9BVK8 224 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 FBXO7Q9Y3I1 522 aa10.82□□□□□ -0.68
LIMS1-204ENST00000409441 SOX21Q9Y651 276 aaPredicted RBP10.82□□□□□ -0.68
LIMS1-204ENST00000409441 RBFOX3A6NFN3 312 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 PMS2P5A8MQ11 134 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 INAFM1C9JVW0 142 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 ATF4P18848 351 aaPredicted RBP10.81□□□□□ -0.68
LIMS1-204ENST00000409441 HTR1DP28221 377 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 SAA4P35542 130 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 HLA-DRB5Q30154 266 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 LHFPL4Q7Z7J7 247 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 TAF15Q92804 592 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMS1-204ENST00000409441 DPM3Q9P2X0 92 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 CDC42EP3Q9UKI2 254 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 SVEP1Q4LDE5 3571 aa10.81□□□□□ -0.68
LIMS1-204ENST00000409441 CEBPZOSA8MTT3 80 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 RBMXL2O75526 392 aaKnown RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 SPCS3P61009 180 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 RPP30P78346 268 aaKnown RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 VWC2Q2TAL6 325 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 RPL39P5Q59GN2 51 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 ZNF506Q5JVG8 444 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 LDLRAD2Q5SZI1 272 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 BCL6BQ8N143 479 aaPredicted RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 LYG1Q8N1E2 194 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 OR10P1Q8NGE3 313 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 OR4A16Q8NH70 328 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 MBD3L1Q8WWY6 194 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 C22orf15Q8WYQ4 148 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 AJUBAQ96IF1 538 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 CLCC1Q96S66 551 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 RSG1Q9BU20 258 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 TBL2Q9Y4P3 447 aaKnown RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 SAA2-SAA4A0A096LPE2 208 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 LY6LH3BQJ8 138 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 OR9G9P0C7N8 305 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 SAA2P0DJI9 122 aaPredicted RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 TMEM41BQ5BJD5 291 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 MINOS1Q5TGZ0 78 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 OR8G2PQ6IF36 304 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 SFT2D1Q8WV19 159 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 MALSU1Q96EH3 234 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 ZNF251Q9BRH9 671 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 QTRT1Q9BXR0 403 aaKnown RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 AMMECR1Q9Y4X0 333 aaPredicted RBP10.8□□□□□ -0.68
LIMS1-204ENST00000409441 MINOS1-NBL1R4GNA1 71 aa10.8□□□□□ -0.68
LIMS1-204ENST00000409441 A0A0U1RQK1 487 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 UBE2L5PA0A1B0GUS4 154 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 HSPB1P04792 205 aaKnown RBP10.79□□□□□ -0.68
LIMS1-204ENST00000409441 CEACAM3P40198 252 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 LINC00205P59089 165 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 CCL20P78556 96 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms