RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MYH15Q9Y2K3 1946 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 ZFHX2Q9C0A1 2572 aaPredicted RBP6.18□□□□□ -1.42
SCN9A-202ENST00000409435 ZNF318Q5VUA4 2279 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 IGHV1-18A0A0C4DH31 117 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 CA11O75493 328 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SRIP30626 198 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 MAS1LP35410 378 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 C20orf27Q9GZN8 174 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SH3BGRL3Q9H299 93 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 SIGLEC7Q9Y286 467 aa6.18□□□□□ -1.42
SCN9A-202ENST00000409435 ASPDHA6ND91 283 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 CTDSPLO15194 276 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 ATP6V0CP27449 155 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 LPAR6P43657 344 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 S100A7L2Q5SY68 101 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 BRD3OSQ6XYD6 125 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 STPG3Q8N7X2 389 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 RAB9AP51151 201 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 SLC25A53Q5H9E4 307 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 KLHL30-AS1Q8NEE0 82 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 ZNF414Q96IQ9 312 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 PRDM13Q9H4Q3 707 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 MYOFQ9NZM1 2061 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 SEC11AP67812 179 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 PAPPA-AS1Q5QFB9 102 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 BOD1L2Q8IYS8 172 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 OR11H7Q8NGC8 314 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 AQP10Q96PS8 301 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 KCNE5Q9UJ90 142 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 TRDCB7Z8K6 153 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 PDCD6O75340 191 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 TNFRSF6BO95407 300 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 CTSDP07339 412 aaPredicted RBP6.17□□□□□ -1.42
SCN9A-202ENST00000409435 IBA57Q5T440 356 aaKnown RBP6.17□□□□□ -1.42
SCN9A-202ENST00000409435 STHQ8IWL8 128 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 SCN3AQ9NY46 2000 aa6.17□□□□□ -1.42
SCN9A-202ENST00000409435 S1PR2O95136 353 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RPL27AP46776 148 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM258P61165 79 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 EWSR1Q01844 656 aaKnown RBP eCLIP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 HIST2H2BCQ6DN03 193 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 ZCCHC24Q8N2G6 241 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TNFSF18Q9UNG2 199 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TBL2Q9Y4P3 447 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 PSPNO60542 156 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 IGKV1D-33P01593 117 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 IGKV1-33P01594 117 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 MYOD1P15172 320 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 VMO1Q7Z5L0 202 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR1B1Q8NGR6 318 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 IL17DQ8TAD2 202 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 GPR27Q9NS67 375 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TRAV5A0A0B4J249 113 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TRAV8-6A0A0B4J262 113 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RBMY1BA6NDE4 496 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RBMY1EA6NEQ0 496 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 H3BUX3 64 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 PITX3O75364 302 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RBMY1DP0C7P1 496 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RBMY1A1P0DJD3 496 aaKnown RBP6.16□□□□□ -1.42
SCN9A-202ENST00000409435 RBMY1CP0DJD4 496 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 ORM2P19652 201 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 CXCL3P19876 107 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 HOXA5P20719 270 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 GLIPR1P48060 266 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OCIAD2Q56VL3 154 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 SPNS2Q8IVW8 549 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR4X1Q8NH49 305 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 PGPEP1LA6NFU8 196 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR2A4O95047 310 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TCF24Q7RTU0 167 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 VKORC1L1Q8N0U8 176 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR4D5Q8NGN0 318 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR2A7Q96R45 310 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 KIR3DL2P43630 455 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 SERF2P84101 59 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 PAX2Q02962 417 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 FXYD3Q14802 87 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 MESTQ5EB52 335 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 PPP1R27Q86WC6 154 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 MMD2Q8IY49 270 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 OR4A5Q8NH83 315 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 GALNT14Q96FL9 552 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 GVINP1Q7Z2Y8 2422 aa6.16□□□□□ -1.42
SCN9A-202ENST00000409435 TRAV8-1A0A0A6YYK1 113 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 NPIPB11E5RHQ5 1161 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 C2orf83Q53S99 150 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 FAM120AOSQ5T036 256 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 OR1L8Q8NGR8 309 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 ORAOV1Q8WV07 137 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 IGHMP01871 453 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 HIST1H4AP62805 103 aaKnown RBP6.15□□□□□ -1.42
SCN9A-202ENST00000409435 OR10J3Q5JRS4 329 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 OR10AC1Q8NH08 325 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM54Q969K7 222 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 C16orf92Q96LL3 132 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 ATP6V0BQ99437 205 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 WNT10AQ9GZT5 417 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 CALYQ9NYX4 217 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 PRNDQ9UKY0 176 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms