RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 IGKV1-6A0A0C4DH72 117 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 SCO1O75880 301 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 OR2J3O76001 311 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 LMO1P25800 156 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 MFAP4P55083 255 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 PPP1R27Q86WC6 154 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 Q8TCH9 128 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 TNFRSF14Q92956 283 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 EAF1Q96JC9 268 aaPredicted RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 BIN3Q9NQY0 253 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 C11orf94C9JXX5 98 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 RD3LP0DJH9 198 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 ZNF90Q03938 601 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 C10orf55Q5SWW7 151 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 UQCC3Q6UW78 93 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 ZFP82Q8N141 532 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 LHFPL5Q8TAF8 219 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 ITLN2Q8WWU7 325 aaPredicted RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 TOLLIPQ9H0E2 274 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 ZNRD1Q9P1U0 126 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 RABAC1Q9UI14 185 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 UPK2O00526 184 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 CFHR2P36980 270 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 DLX1P56177 255 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 ERVFC1-1P60608 527 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 HABP2Q14520 560 aaPredicted RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 DMRTC2Q8IXT2 367 aaPredicted RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 SRSF12Q8WXF0 261 aaKnown RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 FGF23Q9GZV9 251 aaPredicted RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 SH3BGRL3Q9H299 93 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 HIGD1AQ9Y241 93 aa7.49□□□□□ -1.21
LIG4-202ENST00000405925 TNRC6AQ8NDV7 1962 aaKnown RBP7.49□□□□□ -1.21
LIG4-202ENST00000405925 A0A1W2PPQ1 181 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 OR5I1Q13606 314 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 CENPVQ7Z7K6 275 aaPredicted RBP7.48□□□□□ -1.21
LIG4-202ENST00000405925 ARPC1AQ92747 370 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 C18orf12Q96KH6 178 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 SAV1Q9H4B6 383 aaPredicted RBP7.48□□□□□ -1.21
LIG4-202ENST00000405925 TRAV14DV4A0A0A6YYC5 116 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 RAB19A4D1S5 217 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 PPP5D1E7EU14 171 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 RGS13O14921 159 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 NMBP08949 121 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 SULT1A2P50226 295 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 FAM53AQ6NSI3 398 aaPredicted RBP7.48□□□□□ -1.21
LIG4-202ENST00000405925 WFDC3Q8IUB2 231 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 STXBP6Q8NFX7 210 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 CLDND2Q8NHS1 167 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 ZNF462Q96JM2 2506 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 USP9XQ93008 2570 aaPredicted RBP7.48□□□□□ -1.21
LIG4-202ENST00000405925 UNC80Q8N2C7 3258 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 RNF223E7ERA6 249 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 H0YIZ8 118 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 OR9G9P0C7N8 305 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 TPPP2P59282 170 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 RANP62826 216 aaKnown RBP7.48□□□□□ -1.21
LIG4-202ENST00000405925 Q6ZS49 121 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 MARVELD3Q96A59 401 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 TMEM204Q9BSN7 226 aa7.48□□□□□ -1.21
LIG4-202ENST00000405925 RNF222A6NCQ9 220 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 LINC00473A8K010 186 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 TRGV3P03979 118 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 CD55P08174 381 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 SUMO1P63165 101 aaKnown RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 OR5AU1Q8NGC0 362 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 SLC25A33Q9BSK2 321 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 IFT22Q9H7X7 185 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 ZNF331Q9NQX6 463 aaPredicted RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 C15orf61A6NNL5 157 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 CXorf1O96002 111 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 FAM157CP0CG43 387 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 LOXP28300 417 aaPredicted RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 FHITP49789 147 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 GNG4P50150 75 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 RAB24Q969Q5 203 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 BTF3L4Q96K17 158 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 PAXXQ9BUH6 204 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 MANBALQ9NQG1 85 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 VAX2Q9UIW0 290 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 COL4A2P08572 1712 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 IGHV3-23P01764 117 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 SLC25A16P16260 332 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 TMEM241Q24JQ0 296 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 SPRNQ5BIV9 151 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 TMEM219Q86XT9 240 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 DYNLRB2Q8TF09 96 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 CLEC5AQ9NY25 188 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 IGHV3OR16-13A0A075B7E8 117 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 IGHV3-74A0A0B4J1X5 117 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 IGHV1-3A0A0C4DH29 117 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 ATP5IP56385 69 aaPredicted RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 DLK1P80370 383 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 ID3Q02535 119 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 SLC25A48Q6ZT89 311 aaKnown RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 SSX7Q7RTT5 188 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 LRTM2Q8N967 370 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 ZNF418Q8TF45 676 aaPredicted RBP7.47□□□□□ -1.21
LIG4-202ENST00000405925 IFI27L2Q9H2X8 130 aa7.47□□□□□ -1.21
LIG4-202ENST00000405925 M0R1W7 72 aa7.46□□□□□ -1.21
LIG4-202ENST00000405925 WNT2P09544 360 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms