RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 TTC9CQ8N5M4 171 aa6.09□□□□□ -1.43
UPF2-203ENST00000397053 MRPL18Q9H0U6 180 aaKnown RBP6.09□□□□□ -1.43
UPF2-203ENST00000397053 ALX4Q9H161 411 aaPredicted RBP6.09□□□□□ -1.43
UPF2-203ENST00000397053 TOPAZ1Q8N9V7 1692 aa6.09□□□□□ -1.43
UPF2-203ENST00000397053 IGLV1-36A0A0B4J1U3 117 aa6.09□□□□□ -1.44
UPF2-203ENST00000397053 SMIM13P0DJ93 91 aa6.09□□□□□ -1.44
UPF2-203ENST00000397053 BIVMQ86UB2 503 aa6.09□□□□□ -1.44
UPF2-203ENST00000397053 AMELYQ99218 206 aa6.09□□□□□ -1.44
UPF2-203ENST00000397053 RNF114Q9Y508 228 aa6.09□□□□□ -1.44
UPF2-203ENST00000397053 TRAV14DV4A0A0A6YYC5 116 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 C1QTNF9BB2RNN3 333 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 GPX4P36969 197 aaPredicted RBP6.08□□□□□ -1.44
UPF2-203ENST00000397053 IFI27P40305 119 aaPredicted RBP6.08□□□□□ -1.44
UPF2-203ENST00000397053 UCP3P55916 312 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 UNQ6494/PRO21346Q6UXR6 183 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 ACP7Q6ZNF0 438 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 SPAG8Q99932 426 aaPredicted RBP6.08□□□□□ -1.44
UPF2-203ENST00000397053 RHOGP84095 191 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 S100A7L2Q5SY68 101 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 TMEM105Q8N8V8 129 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 OR5P3Q8WZ94 311 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 C11orf68Q9H3H3 251 aaKnown RBP6.08□□□□□ -1.44
UPF2-203ENST00000397053 KBTBD11-OT1A0A1B0GTJ5 212 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 C12orf77C9JDV5 145 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 CD24P25063 80 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 TMEM91Q6ZNR0 172 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 AQP3Q92482 292 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 PRADC1Q9BSG0 188 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 OR5AC2Q9NZP5 309 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 LINC00312Q9Y6C7 94 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 UBR2Q8IWV8 1755 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 LOC390937A0A1W2PQ73 354 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 B4DSR2 109 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 LYNX1G3V0Z9 82 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 LYNX1P0DP58 116 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 CCL3L1P16619 93 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 AGAP20933 346 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 GCHFRP30047 84 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 TCF23Q7RTU1 214 aa6.08□□□□□ -1.44
UPF2-203ENST00000397053 MRPL16Q9NX20 251 aaKnown RBP6.08□□□□□ -1.44
UPF2-203ENST00000397053 IGKV1-8A0A0C4DH67 115 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 PEX7O00628 323 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 LEPP41159 167 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZNF506Q5JVG8 444 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 SELENOHQ8IZQ5 122 aaKnown RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 LINC00527Q9UJ94 153 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 P2RY4P51582 365 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 CKS1BP61024 79 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZNF585BQ52M93 769 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 SPATA45Q537H7 98 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 C9orf106Q8NAJ2 232 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 OR52E5Q8NH55 327 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 SLC50A1Q9BRV3 221 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 MRPL20Q9BYC9 149 aaKnown RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 AICDAQ9GZX7 198 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 NUP98P52948 1817 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 A0A1B0GUT8 65 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 F8WEM9 126 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 APOMO95445 188 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 TMEM50AO95807 157 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 C1orf100Q5SVJ3 147 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZNF600Q6ZNG1 722 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZCCHC24Q8N2G6 241 aaKnown RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 CIARTQ8N365 385 aaPredicted RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 Q96M66 194 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ADARB2-AS1A8MUL3 147 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 PRB3Q04118 309 aaPredicted RBP6.07□□□□□ -1.44
UPF2-203ENST00000397053 PSG7Q13046 419 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 FBLN7Q53RD9 439 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 CENPWQ5EE01 88 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 C20orf204Q6ZNR8 217 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 MYOM1P52179 1685 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 TNCP24821 2201 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 GNLYP22749 145 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 RIPPLY3P57055 190 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 ZNF345Q14585 488 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 C2orf68Q2NKX9 166 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 TMEM95Q3KNT9 176 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 FER1L6-AS1Q8NA97 138 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 NEUROG1Q92886 237 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 SMIM8Q96KF7 97 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 SLC25A15Q9Y619 301 aa6.07□□□□□ -1.44
UPF2-203ENST00000397053 KNDC1Q76NI1 1749 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TRGV11A0A075B6L2 103 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 A0A0U1RRA0 63 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 FABP5P3A8MUU1 101 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TCF21O43680 179 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 OR10J3Q5JRS4 329 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 CYB5R2Q6BCY4 276 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 ASCL2Q99929 193 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 RARRES2Q99969 163 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 UQCR10Q9UDW1 63 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TRIP11Q15643 1979 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.06□□□□□ -1.44
UPF2-203ENST00000397053 KLK2P20151 261 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 CEACAM8P31997 349 aaPredicted RBP6.06□□□□□ -1.44
UPF2-203ENST00000397053 FHITP49789 147 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 EFNA4P52798 201 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 PSMG4Q5JS54 123 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms