RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 OPN1MW3P0DN78 364 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 MC5RP33032 325 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 RPL8P62917 257 aaKnown RBP12.13□□□□□ -0.47
CBX3-202ENST00000396386 ARSJQ5FYB0 599 aaPredicted RBP12.13□□□□□ -0.47
CBX3-202ENST00000396386 TMEM167AQ8TBQ9 72 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 RAB1CQ92928 201 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 TUBA4BQ9H853 241 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 PXMP4Q9Y6I8 212 aa12.13□□□□□ -0.47
CBX3-202ENST00000396386 PPIAL4CA0A0B4J2A2 164 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 PPIAL4GP0DN37 164 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 PSMB3P49720 205 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 PRRX1P54821 245 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 HLA-DRB5Q30154 266 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 WDR25Q64LD2 544 aaPredicted RBP12.12□□□□□ -0.47
CBX3-202ENST00000396386 FAM90A2PQ658T7 463 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 SLC35E3Q7Z769 313 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 OR1L8Q8NGR8 309 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 TVP23CQ96ET8 276 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 CLEC7AQ9BXN2 247 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 LSM4Q9Y4Z0 139 aaKnown RBP12.12□□□□□ -0.47
CBX3-202ENST00000396386 COLCA2A8K830 154 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 SOD3P08294 240 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 FLI1Q01543 452 aaPredicted RBP12.12□□□□□ -0.47
CBX3-202ENST00000396386 MEF2BQ02080 365 aaPredicted RBP12.12□□□□□ -0.47
CBX3-202ENST00000396386 VMA21Q3ZAQ7 101 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 C4orf17Q53FE4 359 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 TEPPQ6URK8 271 aa12.12□□□□□ -0.47
CBX3-202ENST00000396386 HELZ2Q9BYK8 2649 aaKnown RBP12.11□□□□□ -0.47
CBX3-202ENST00000396386 hCG_1809904A0A1W2PP81 198 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 A0A1W2PPE2 198 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 A0A1W2PR64 198 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 A0A1W2PRV1 198 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 YIF1AO95070 293 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 RAB31Q13636 194 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 BSXQ3C1V8 233 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 MIC13Q5XKP0 118 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 DTX2Q86UW9 622 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 IQCF2Q8IXL9 164 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 BEND2Q8NDZ0 799 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 TMPRSS5Q9H3S3 457 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 NDUFA4L2Q9NRX3 87 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 MLXQ9UH92 298 aa12.11□□□□□ -0.47
CBX3-202ENST00000396386 AMMECR1Q9Y4X0 333 aaPredicted RBP12.11□□□□□ -0.47
CBX3-202ENST00000396386 A0A1W2PN81 502 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 A0A1W2PPV4 95 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 INS-IGF2F8WCM5 200 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 NDUFS6O75380 124 aaKnown RBP12.1□□□□□ -0.47
CBX3-202ENST00000396386 LY6HO94772 140 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 IGLV1-47P01700 117 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 IGLV2-23P01705 113 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 RNASE2P10153 161 aaKnown RBP12.1□□□□□ -0.47
CBX3-202ENST00000396386 DEFA4P12838 97 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 CHRNA7P36544 502 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 LIPFP07098 398 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 PNRC1Q12796 327 aaPredicted RBP12.1□□□□□ -0.47
CBX3-202ENST00000396386 TMEM249Q2WGJ8 235 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 GCSAMLQ5JQS6 135 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 ITLN2Q8WWU7 325 aaPredicted RBP12.1□□□□□ -0.47
CBX3-202ENST00000396386 HIST1H2BAQ96A08 127 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 C1orf159Q96HA4 380 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 ONECUT1Q9UBC0 465 aa12.1□□□□□ -0.47
CBX3-202ENST00000396386 A0A087WWC5 75 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 MT-ND4LP03901 98 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 FOLR2P14207 255 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 COX7A1P24310 79 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 LGALS7P47929 136 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 CD81P60033 236 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 B2MP61769 119 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 ERHP84090 104 aaKnown RBP12.09□□□□□ -0.47
CBX3-202ENST00000396386 STPG3Q8N7X2 389 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 LY6G5BQ8NDX9 201 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 OR10W1Q8NGF6 305 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 SSMEM1Q8WWF3 244 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 ISOC2Q96AB3 205 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 ZNF430Q9H8G1 570 aaPredicted RBP12.09□□□□□ -0.47
CBX3-202ENST00000396386 CHODLQ9H9P2 273 aa12.09□□□□□ -0.47
CBX3-202ENST00000396386 PATZ1Q9HBE1 687 aaKnown RBP12.09□□□□□ -0.47
CBX3-202ENST00000396386 CFAP46Q8IYW2 2715 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 TMEM250H0YL14 139 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 BUB1B-PAK6H3BSN5 160 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 ENSAO43768 121 aaKnown RBP12.08□□□□□ -0.48
CBX3-202ENST00000396386 SLC25A17O43808 307 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 OR2C1O95371 312 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 CRYBA1P05813 215 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 AGAP20933 346 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 RPL29P47914 159 aaKnown RBP12.08□□□□□ -0.48
CBX3-202ENST00000396386 UQCRFS1P47985 274 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 DLX1P56177 255 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 IGHV3-72A0A0B4J1Y9 119 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 B4DEV8 164 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 C22orf46C9J442 243 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 IGFBP2P18065 325 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 GNLYP22749 145 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 TMEM144Q7Z5S9 345 aa12.08□□□□□ -0.48
CBX3-202ENST00000396386 IGHV1-3A0A0C4DH29 117 aa12.07□□□□□ -0.48
CBX3-202ENST00000396386 ZNF727A8MUV8 499 aa12.07□□□□□ -0.48
CBX3-202ENST00000396386 TEX45Q8NA69 505 aa12.07□□□□□ -0.48
CBX3-202ENST00000396386 OR4P4Q8NGL7 312 aa12.07□□□□□ -0.48
CBX3-202ENST00000396386 GATAD1Q8WUU5 269 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms