RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 CT45A5P0DMU8 189 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 CT45A7P0DMV0 189 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 LYPD2Q6UXB3 125 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 TCF19Q9Y242 345 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 hADV38S2A0JD32 116 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 ZNF705FA8MVS1 300 aaPredicted RBP11.42□□□□□ -0.58
SNCA-204ENST00000394989 IGKV1-16P04430 117 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 ZNF705DP0CH99 300 aaPredicted RBP11.42□□□□□ -0.58
SNCA-204ENST00000394989 ZNF705BP0CI00 300 aaPredicted RBP11.42□□□□□ -0.58
SNCA-204ENST00000394989 MYOD1P15172 320 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 CCL3L1P16619 93 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 FFAR4Q5NUL3 377 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 SSX8Q7RTT4 187 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 OR10G9Q8NGN4 311 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 OR10G7Q8NGN6 311 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 LHX4Q969G2 390 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 ELOVL1Q9BW60 279 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 TMEM14BQ9NUH8 114 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 SLC39A9Q9NUM3 307 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 FUT9Q9Y231 359 aa11.42□□□□□ -0.58
SNCA-204ENST00000394989 PPIAL4EA0A075B759 164 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 NKX6-3A6NJ46 265 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 PPIAL4DF5H284 164 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 PPIAL4FP0DN26 164 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 CD1BP29016 333 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 RPL31P62899 125 aaKnown RBP11.41□□□□□ -0.58
SNCA-204ENST00000394989 RBPJQ06330 500 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 CST9LP1Q5W188 147 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 HEYLQ9NQ87 328 aaPredicted RBP11.41□□□□□ -0.58
SNCA-204ENST00000394989 TMEM106BQ9NUM4 274 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 PITPNC1Q9UKF7 332 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 WDR83OSQ9Y284 106 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 PPIAL4AQ9Y536 164 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 MAS1LP35410 378 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 TMEM200BQ69YZ2 307 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 TEX38Q6PEX7 206 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 RAXQ9Y2V3 346 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 ARFGEF3Q5TH69 2177 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 SPTBN4Q9H254 2564 aa11.41□□□□□ -0.58
SNCA-204ENST00000394989 TRGV8A0A0C4DH27 118 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 TMPRSS3P57727 454 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 PCGF1Q9BSM1 259 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 CTSZQ9UBR2 303 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 SRRM4A7MD48 611 aaKnown RBP11.4□□□□□ -0.58
SNCA-204ENST00000394989 IL6RP08887 468 aaPredicted RBP11.4□□□□□ -0.58
SNCA-204ENST00000394989 NHLH1Q02575 133 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 OR1P1Q8NH06 330 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 C1orf159Q96HA4 380 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 VAX2Q9UIW0 290 aa11.4□□□□□ -0.58
SNCA-204ENST00000394989 FOXA2Q9Y261 457 aaPredicted RBP11.4□□□□□ -0.58
SNCA-204ENST00000394989 CD81P60033 236 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 MEF2CQ06413 473 aaPredicted RBP11.4□□□□□ -0.59
SNCA-204ENST00000394989 GCSAMLQ5JQS6 135 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 TREML4Q6UXN2 200 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 TMEM183AQ8IXX5 376 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 OR10A7Q8NGE5 316 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 ADTRPQ96IZ2 230 aa11.4□□□□□ -0.59
SNCA-204ENST00000394989 HRNRQ86YZ3 2850 aaPredicted RBP11.4□□□□□ -0.59
SNCA-204ENST00000394989 CTXND1A0A1B0GTU2 59 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 POU2AF1Q16633 256 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 TMEM30BQ3MIR4 351 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 SLC35E3Q7Z769 313 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 GATAD1Q8WUU5 269 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 PLAUP00749 431 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 GRNP28799 593 aaKnown RBP11.39□□□□□ -0.59
SNCA-204ENST00000394989 ZNF833PQ6ZTB9 187 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 RAB24Q969Q5 203 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 ZNF714Q96N38 554 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 P2RX4Q99571 388 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 GAL3ST2Q9H3Q3 398 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 SPTA1P02549 2419 aa11.39□□□□□ -0.59
SNCA-204ENST00000394989 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.38□□□□□ -0.59
SNCA-204ENST00000394989 C16orf82Q7Z2V1 217 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 MS4A5Q9H3V2 200 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 ATRXP46100 2492 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 A0A087WWC5 75 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 TFPI2P48307 235 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 HSPE1P61604 102 aaKnown RBP11.38□□□□□ -0.59
SNCA-204ENST00000394989 DMRTA1Q5VZB9 504 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 ZNF709Q8N972 641 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 OR13D1Q8NGV5 346 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 NGBQ9NPG2 151 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 FAM3BP58499 235 aaPredicted RBP11.38□□□□□ -0.59
SNCA-204ENST00000394989 RPP30P78346 268 aaKnown RBP11.38□□□□□ -0.59
SNCA-204ENST00000394989 LINC01560Q8TB33 94 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 MGST2Q99735 147 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 GOLT1BQ9Y3E0 138 aa11.38□□□□□ -0.59
SNCA-204ENST00000394989 TNCP24821 2201 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 A0A0U1RQK1 487 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 PPP5D1E7EU14 171 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 C17orf112F2Z3M2 114 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 DVL1O14640 695 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 SFTPCP11686 197 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 MEF2BQ02080 365 aaPredicted RBP11.37□□□□□ -0.59
SNCA-204ENST00000394989 OR5R1Q8NH85 324 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 SMIM7Q9BQ49 75 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 ACTR3CQ9C0K3 210 aaPredicted RBP11.37□□□□□ -0.59
SNCA-204ENST00000394989 DYNLRB1Q9NP97 96 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 M0R143 59 aa11.37□□□□□ -0.59
SNCA-204ENST00000394989 SIAH2O43255 324 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms