RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 AUP1Q9Y679 476 aa9.66□□□□□ -0.86
PTPRF-203ENST00000372407 IGLV3-12A0A075B6K2 115 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 PSG7Q13046 419 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 RNFT1Q5M7Z0 435 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 FAM53AQ6NSI3 398 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-203ENST00000372407 LINC00305Q7Z4B0 112 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 BIVMQ86UB2 503 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 HIST1H4GQ99525 98 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 PARD6GQ9BYG4 376 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-203ENST00000372407 B9A039 149 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 MOSP00540 346 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 RELQ04864 619 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-203ENST00000372407 LY6G6FQ5SQ64 297 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 PEAR1Q5VY43 1037 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-203ENST00000372407 PNKDQ8N490 385 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 KCNS1Q96KK3 526 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 IL36BQ9NZH7 164 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 LOC105371242A0A075B767 164 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 CGAP01215 116 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 ATOH7Q8N100 152 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 ZNF525Q8N782 197 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 SDF2L1Q9HCN8 221 aa9.65□□□□□ -0.86
PTPRF-203ENST00000372407 ICAM4Q14773 271 aa9.65□□□□□ -0.87
PTPRF-203ENST00000372407 MRPL14Q6P1L8 145 aaKnown RBP9.65□□□□□ -0.87
PTPRF-203ENST00000372407 C1orf162Q8NEQ5 155 aaPredicted RBP9.65□□□□□ -0.87
PTPRF-203ENST00000372407 OR13A1Q8NGR1 328 aa9.65□□□□□ -0.87
PTPRF-203ENST00000372407 CLDND2Q8NHS1 167 aa9.65□□□□□ -0.87
PTPRF-203ENST00000372407 FNDC1Q4ZHG4 1894 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-203ENST00000372407 IGHV3-35A0A0C4DH35 117 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 CSRP1P21291 193 aaKnown RBP9.64□□□□□ -0.87
PTPRF-203ENST00000372407 CACNG8Q8WXS5 425 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 IGKV1-9A0A0C4DH69 117 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 TM4SF5O14894 197 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 LYPD3O95274 346 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 C19orf54Q5BKX5 351 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 FAM89BQ8N5H3 189 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 WDYHV1Q96HA8 205 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 DOCK6Q96HP0 2047 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 RBFOX2O43251 390 aaKnown RBP eCLIP9.64□□□□□ -0.878e-7■□□□□ 9.9
PTPRF-203ENST00000372407 WBP1Q96G27 269 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 FOXJ2Q9P0K8 574 aa9.64□□□□□ -0.87
PTPRF-203ENST00000372407 TRBV6-7A0A0A0MS04 114 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 J3QRE1 110 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 SLC17A3O00476 420 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 GPX1P07203 203 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 IGFBP2P18065 325 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 PRR32B1ATL7 298 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 H0YIZ8 118 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 HOXA5P20719 270 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TFF3Q07654 80 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 AMMECR1LQ6DCA0 310 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TMEM136Q6ZRR5 245 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 OR4D5Q8NGN0 318 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 GTF3AQ92664 365 aaKnown RBP9.63□□□□□ -0.87
PTPRF-203ENST00000372407 PMCHL2Q9BQD1 86 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 H7C2G1 150 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 ADIPOQQ15848 244 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TMEM106BQ9NUM4 274 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 DPM3Q9P2X0 92 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 SRCAPQ6ZRS2 3230 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 SHANK1Q9Y566 2161 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 KBTBD11-OT1A0A1B0GTJ5 212 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TMPRSS3P57727 454 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 SLC25A28Q96A46 364 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 KIR2DL4Q99706 377 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 KLK15Q9H2R5 256 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 RAXQ9Y2V3 346 aa9.63□□□□□ -0.87
PTPRF-203ENST00000372407 MRPS18CQ9Y3D5 142 aaKnown RBP9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TCF20Q9UGU0 1960 aaKnown RBP9.63□□□□□ -0.87
PTPRF-203ENST00000372407 TRBV20OR9-2A0A075B6H5 130 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 OR11H12B2RN74 326 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 CTAG1AP78358 180 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 TBR1Q16650 682 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 PAPPA-AS1Q5QFB9 102 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 DNLZQ5SXM8 178 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 OR11H1Q8NG94 326 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 OR11H2Q8NH07 326 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ELOVL5Q9NYP7 299 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 MYO7BQ6PIF6 2116 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 CCL1P22362 96 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ATP5G3P48201 142 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ATP5G2Q06055 141 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 HERPUD1Q15011 391 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 FAM216BQ8N7L0 139 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ANKRD36A6QL64 1941 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 A0A1B0GUT8 65 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 F8VVB4 439 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 F8VWA3 439 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 PEX7O00628 323 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 TSPOP30536 169 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 GAS1P54826 345 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 TAS2R60P59551 318 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ID3Q02535 119 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ACSF3Q4G176 576 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-203ENST00000372407 TMEM144Q7Z5S9 345 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 PAQR4Q8N4S7 273 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-203ENST00000372407 FAM131CQ96AQ9 280 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 GPR82Q96P67 336 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 DCTN5Q9BTE1 182 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 TRAV9-1A0A075B6T8 112 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms