RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 SDF2L1Q9HCN8 221 aa6.27□□□□□ -1.41
SYNE1-208ENST00000367256 TRAV12-3A0A0B4J271 114 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 IGHMP01871 453 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 ERGP11308 486 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 GPX4P36969 197 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 OR11H4Q8NGC9 324 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 CLEC7AQ9BXN2 247 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 WNT10AQ9GZT5 417 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 CALYQ9NYX4 217 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 ATP5LO75964 103 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 PF4P02776 101 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 MALP21145 153 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 LINC01559Q495D7 138 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SLC25A20O43772 301 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SCTP09683 121 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 C9orf50Q5SZB4 431 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 OR2K2Q8NGT1 345 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SIRT4Q9Y6E7 314 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 PCNX3Q9H6A9 2034 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 PLXNA2O75051 1894 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 GREB1LQ9C091 1923 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 PGPA6NDG6 321 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 NDUFA3O95167 84 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 LEPP41159 167 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 TNFRSF14Q92956 283 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SCGB3A1Q96QR1 104 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 IMMP2LQ96T52 175 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 CRYBB3P26998 211 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 LINC00305Q7Z4B0 112 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 ST6GALNAC3Q8NDV1 305 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 FAM60AQ9NP50 221 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 PGLYRP1O75594 196 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 NUTF2P61970 127 aaKnown RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 CD69Q07108 199 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 DMRTA1Q5VZB9 504 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 OR5AN1Q8NGI8 311 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 Q96M66 194 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 MPV17P39210 176 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 UCP2P55851 309 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SSBP3Q9BWW4 388 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 NPCDR1Q9BY65 106 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 RNASE4P34096 147 aaKnown RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 C19orf48Q6RUI8 117 aa6.26□□□□□ -1.41
SYNE1-208ENST00000367256 SSBP4Q9BWG4 385 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-208ENST00000367256 ODAMA1E959 279 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 NPIPB11E5RHQ5 1161 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 KIAA1644Q3SXP7 199 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 PLXNB3Q9ULL4 1909 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 C2orf16Q68DN1 1984 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 LDLRAD4O15165 306 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 MOSP00540 346 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 TYMSP04818 313 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 GATAD1Q8WUU5 269 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 NRTNQ99748 197 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 DTX4Q9Y2E6 619 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 COX5BP10606 129 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 COL9A1P20849 921 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 CKS1BP61024 79 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF818PQ6ZRF7 136 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 GPR146Q96CH1 333 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 SPXQ9BT56 116 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 NPFFR1Q9GZQ6 430 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 UPK3AO75631 287 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 LINC00614P0C842 121 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF708P17019 499 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 PTGDSP41222 190 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 SDHCQ99643 169 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-208ENST00000367256 IDI2-AS1Q9NZ38 188 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 A0A1W2PP11 408 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 GCHFRP30047 84 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 WNT2BQ93097 391 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 TANC1Q9C0D5 1861 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 RCC1LQ96I51 464 aaKnown RBP6.25□□□□□ -1.41
SYNE1-208ENST00000367256 LTBP4Q8N2S1 1624 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 TRAV21A0A0B4J279 112 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 A0A1W2PPV9 198 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 LY6EQ16553 131 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 DUX3Q96PT4 197 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 M0R381 172 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 ITLN1Q8WWA0 313 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 ST6GALNAC6Q969X2 333 aa6.25□□□□□ -1.41
SYNE1-208ENST00000367256 RPP21Q9H633 154 aaKnown RBP6.25□□□□□ -1.41
SYNE1-208ENST00000367256 PGPEP1LA6NFU8 196 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 C9JCJ5 164 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 PEX7O00628 323 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 ZG16O60844 167 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 DRD3P35462 400 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 ZAR1Q86SH2 424 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF784Q8NCA9 323 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM187Q14656 261 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TET1Q8NFU7 2136 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 NPPCP23582 126 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF385AQ96PM9 386 aaKnown RBP6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TRAV8-2A0A0B4J237 113 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 UBE2CO00762 179 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 HSPE1P61604 102 aaKnown RBP6.24□□□□□ -1.41
SYNE1-208ENST00000367256 PAX2Q02962 417 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 OR10J3Q5JRS4 329 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 C14orf144Q96I85 54 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 PRDM13Q9H4Q3 707 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms