RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HSPB9Q9BQS6 159 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 RNASE7Q9H1E1 156 aaKnown RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 POLR3KQ9Y2Y1 108 aaPredicted RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 SAA2-SAA4A0A096LPE2 208 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 J3QW42 95 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 SAA2P0DJI9 122 aaPredicted RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 VDAC2P45880 294 aaPredicted RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 COA6Q5JTJ3 125 aaKnown RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 DBX2Q6ZNG2 339 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 PPP1R35Q8TAP8 253 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 TMEM68Q96MH6 324 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 UHRF2Q96PU4 802 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 IFI27L2Q9H2X8 130 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 PLEKHA3Q9HB20 300 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 MKRN2OSH3BPM6 223 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 SERF1AO75920 110 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 SP9P0CG40 484 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 CCKARP32238 428 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 LCN2P80188 198 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 MRPS11P82912 194 aaKnown RBP10□□□□□ -0.81
CLIP3-201ENST00000360535 KRTCAP3Q53RY4 240 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 CT45A1Q5HYN5 189 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 PQLC2Q6ZP29 291 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 CT45A3Q8NHU0 189 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 PROCRQ9UNN8 238 aa10□□□□□ -0.81
CLIP3-201ENST00000360535 NBASA2RRP1 2371 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 C19orf67A6NJJ6 358 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 MGST3O14880 152 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 REG1BP48304 166 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 RHOBP62745 196 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 RAB31Q13636 194 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 DEFB109BQ30KR1 87 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 PRR7Q8TB68 274 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 CCL13Q99616 98 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 SNHG12Q9BXW3 62 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 ATMQ13315 3056 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 TYMSP04818 313 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 BTF3P20290 206 aaKnown RBP9.99□□□□□ -0.81
CLIP3-201ENST00000360535 KRTDAPP60985 99 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 MRPL54Q6P161 138 aaKnown RBP9.99□□□□□ -0.81
CLIP3-201ENST00000360535 BHLHA15Q7RTS1 189 aaPredicted RBP9.99□□□□□ -0.81
CLIP3-201ENST00000360535 ZCCHC24Q8N2G6 241 aaKnown RBP9.99□□□□□ -0.81
CLIP3-201ENST00000360535 RPRMLQ8N4K4 120 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 OR4S2Q8NH73 311 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 PARD6AQ9NPB6 346 aa9.99□□□□□ -0.81
CLIP3-201ENST00000360535 A8MXE2 369 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 MMP23AO75900 390 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 CA1P00915 261 aaPredicted RBP9.98□□□□□ -0.81
CLIP3-201ENST00000360535 CDKN1AP38936 164 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 PDLIM4P50479 330 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 SUMO1P63165 101 aaKnown RBP9.98□□□□□ -0.81
CLIP3-201ENST00000360535 LHFPL4Q7Z7J7 247 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 TCTEX1D1Q8N7M0 179 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 NAT8BQ9UHF3 227 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 WT1P19544 449 aaPredicted RBP9.98□□□□□ -0.81
CLIP3-201ENST00000360535 LOXL3P58215 753 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 TMEM144Q7Z5S9 345 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 C1orf159Q96HA4 380 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 JPT1Q9UK76 154 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 OR51B2Q9Y5P1 312 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 COL27A1Q8IZC6 1860 aaPredicted RBP9.98□□□□□ -0.81
CLIP3-201ENST00000360535 SPAARA0A1B0GVQ0 90 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 J3QR06 171 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 TMPRSS2O15393 492 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 MPDU1O75352 247 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 IGKV1-16P04430 117 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 PMCHP20382 165 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 FAM216BQ8N7L0 139 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 OR10W1Q8NGF6 305 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 C2orf88Q9BSF0 95 aa9.98□□□□□ -0.81
CLIP3-201ENST00000360535 HELTA6NFD8 242 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 A6NNC1 897 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 SRRM5B3KS81 715 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 OR10J1P30954 320 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 GNG4P50150 75 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 NUTF2P61970 127 aaKnown RBP9.97□□□□□ -0.81
CLIP3-201ENST00000360535 FOXL1Q12952 345 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 CENPWQ5EE01 88 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 MMD2Q8IY49 270 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 SGK494Q96LW2 274 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 DIRC2Q96SL1 478 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 TACC2O95359 2948 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 YPEL1O60688 119 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 ZNF883P0CG24 379 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 HSPE1P61604 102 aaKnown RBP9.97□□□□□ -0.81
CLIP3-201ENST00000360535 Q6ZWC4 215 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 OR9G1Q8NH87 305 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 SARAFQ96BY9 339 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 YPEL2Q96QA6 119 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 SSBP3Q9BWW4 388 aaPredicted RBP9.97□□□□□ -0.81
CLIP3-201ENST00000360535 MT-CO2P00403 227 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 TRIP6Q15654 476 aaKnown RBP9.97□□□□□ -0.81
CLIP3-201ENST00000360535 DNLZQ5SXM8 178 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 RAB1CQ92928 201 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 EAF1Q96JC9 268 aaPredicted RBP9.97□□□□□ -0.81
CLIP3-201ENST00000360535 LINC00479Q96M42 142 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 NABP2Q9BQ15 211 aa9.97□□□□□ -0.81
CLIP3-201ENST00000360535 DYSFO75923 2080 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 C15orf61A6NNL5 157 aa9.96□□□□□ -0.81
CLIP3-201ENST00000360535 APELAP0DMC3 54 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms