RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 ZNF462Q96JM2 2506 aa8.27□□□□□ -1.09
CUX1-203ENST00000360264 LINC01549A6NIU2 74 aa8.27□□□□□ -1.09
CUX1-203ENST00000360264 LCN2P80188 198 aa8.27□□□□□ -1.09
CUX1-203ENST00000360264 SAP25Q8TEE9 199 aa8.27□□□□□ -1.09
CUX1-203ENST00000360264 DENND4AQ7Z401 1863 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 LINC00305Q7Z4B0 112 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 P2RY4P51582 365 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 C8orf82Q6P1X6 216 aaPredicted RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 WFIKKN1Q96NZ8 548 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 LINC01587Q99440 93 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 YAE1D1Q9NRH1 226 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 TLN1Q9Y490 2541 aaKnown RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 HKR1P10072 659 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 COX6A1P12074 109 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 GOLT1AQ6ZVE7 132 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 HS3ST3B1Q9Y662 390 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 PLXNB3Q9ULL4 1909 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 TCF19Q9Y242 345 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 KBTBD11-OT1A0A1B0GTJ5 212 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 A1L4Q6 167 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 COL5A3P25940 1745 aaPredicted RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 EFNB2P52799 333 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 OR10S1Q8NGN2 331 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 KIAA1549Q9HCM3 1950 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 UNC119Q13432 240 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 LEMD1Q68G75 181 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 ACP7Q6ZNF0 438 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 Q6ZT83 130 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 TMEM170BQ5T4T1 132 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 PNKDQ8N490 385 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 C5orf66Q9H5L9 145 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 SNAI3Q3KNW1 292 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 MRPL16Q9NX20 251 aaKnown RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 TYMSP04818 313 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 LIMS1P48059 325 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 GPR146Q96CH1 333 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 ZNF501Q96CX3 271 aaPredicted RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.26□□□□□ -1.09
CUX1-203ENST00000360264 IGKV3D-11A0A0A0MRZ8 115 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 C7orf71A4D174 169 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 IGKV3-11P04433 115 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 ZNF688P0C7X2 276 aa8.26□□□□□ -1.09
CUX1-203ENST00000360264 SCARF2Q96GP6 870 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 ZNF703Q9H7S9 590 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 GTSCR1Q86UQ5 136 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 RNF182Q8N6D2 247 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 PARLQ9H300 379 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 CELA2AP08217 269 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 CBLN2Q8IUK8 224 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 SLC22A18ASQ8N1D0 253 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 C9JCJ5 164 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 CDK2AP2O75956 126 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 KCNK17Q96T54 332 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 TRBV7-9A0A0J9YWB2 115 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 A0A1W2PP11 408 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 SRSF12Q8WXF0 261 aaKnown RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 DUX3Q96PT4 197 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 DLL3Q9NYJ7 618 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 LEPP41159 167 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 SLC50A1Q9BRV3 221 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 IGKV3D-15A0A087WSY6 115 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 IGKV3-15P01624 115 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 PEBP1P30086 187 aaKnown RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 GLIPR1P48060 266 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 RSPO4Q2I0M5 234 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 NPCDR1Q9BY65 106 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 C21orf62Q9NYP8 219 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 RCC1P18754 421 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 TPRX1Q8N7U7 411 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 TMEM160Q9NX00 188 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 RLFQ13129 1914 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 FOXI3A8MTJ6 420 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 LY6EQ16553 131 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 PHLDA1Q8WV24 401 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 RTN4RQ9BZR6 473 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 TRBV5-7A0A0A0MS05 114 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 OR11H12B2RN74 326 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 TDGF1P13385 188 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 LINC01559Q495D7 138 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 OR11H1Q8NG94 326 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 OR11H2Q8NH07 326 aa8.25□□□□□ -1.09
CUX1-203ENST00000360264 RGP1Q92546 391 aaPredicted RBP8.25□□□□□ -1.09
CUX1-203ENST00000360264 TNRC6AQ8NDV7 1962 aaKnown RBP8.24□□□□□ -1.09
CUX1-203ENST00000360264 CRPP02741 224 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 VGLL1Q99990 258 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 BRWD3Q6RI45 1802 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 A0A1B0GUT8 65 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 IGKV1-8A0A0C4DH67 115 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 IGKV1D-16P01601 117 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 CEACAM1P13688 526 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 TMEM42Q69YG0 159 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 TRBV20OR9-2A0A075B6H5 130 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 SCGB3A1Q96QR1 104 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 LOC102724200A0A096LPH7 203 aaPredicted RBP8.24□□□□□ -1.09
CUX1-203ENST00000360264 NPIPB9F8W1W9 429 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 NPIPB7O75200 414 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 CXCL3P19876 107 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 C1QTNF5Q9BXJ0 243 aa8.24□□□□□ -1.09
CUX1-203ENST00000360264 ACSF3Q4G176 576 aaPredicted RBP8.24□□□□□ -1.09
CUX1-203ENST00000360264 TMEM167AQ8TBQ9 72 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms