RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CNTRLQ7Z7A1 2325 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 SPTBN2O15020 2390 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 MMP23AO75900 390 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 IFNA7P01567 189 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 OR2F1Q13607 317 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 PVRIGQ6DKI7 326 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 TTC9CQ8N5M4 171 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 MARC2Q969Z3 335 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 UBE2L5PA0A1B0GUS4 154 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 OR4C46A6NHA9 309 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 HBE1P02100 147 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 REG1AP05451 166 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 RD3LP0DJH9 198 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 SNRPD3P62318 126 aaKnown RBP7.36□□□□□ -1.23
UPF2-202ENST00000357604 CLINT1Q14677 625 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 EBLN2Q6P2I7 272 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 ZNF429Q86V71 674 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 RTBDNQ9BSG5 229 aaPredicted RBP7.36□□□□□ -1.23
UPF2-202ENST00000357604 SMIM3Q9BZL3 60 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 ZNF581Q9P0T4 197 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 NCOA6Q14686 2063 aaPredicted RBP7.36□□□□□ -1.23
UPF2-202ENST00000357604 RPL19P84098 196 aaKnown RBP7.36□□□□□ -1.23
UPF2-202ENST00000357604 C10orf113Q5VZT2 155 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 LYPD6Q86Y78 171 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 OR52B4Q8NGK2 314 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 ATP5SQ99766 215 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 SMR3AQ99954 134 aa7.36□□□□□ -1.23
UPF2-202ENST00000357604 JTBO76095 146 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 NPVFQ9HCQ7 196 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 BRCA2P51587 3418 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 IGKV1D-8A0A087WSZ0 117 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 A0A1W2PPI3 338 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 MBPP02686 304 aaPredicted RBP7.35□□□□□ -1.23
UPF2-202ENST00000357604 BLOC1S1P78537 153 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 PRSS54Q6PEW0 395 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 OR2C3Q8N628 320 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 OR5B12Q96R08 314 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 ARL6Q9H0F7 186 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 SLC45A2Q9UMX9 530 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 HYPMO75409 117 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 ZNF600Q6ZNG1 722 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 KHDC3LQ587J8 217 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 LHFPL1Q86WI0 220 aa7.35□□□□□ -1.23
UPF2-202ENST00000357604 LGALS1P09382 135 aaKnown RBP7.34□□□□□ -1.23
UPF2-202ENST00000357604 FAM103A1Q9BTL3 118 aaKnown RBP7.34□□□□□ -1.23
UPF2-202ENST00000357604 SLC39A9Q9NUM3 307 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 MPDZO75970 2070 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 RAMP3O60896 148 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 IGHV3-11P01762 117 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 ZNF735P0CB33 412 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 RHOBP62745 196 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 PSG9Q00887 426 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 ST8SIA2Q92186 375 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 F11RQ9Y624 299 aaKnown RBP7.34□□□□□ -1.23
UPF2-202ENST00000357604 IGKV1-6A0A0C4DH72 117 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 OVOL1O14753 267 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 IGHG2P01859 326 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 GPR183P32249 361 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 ACOT7LQ6ZUV0 252 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 C1QL4Q86Z23 238 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 SOSTQ9BQB4 213 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 MARVELD1Q9BSK0 173 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 HCFC1P51610 2035 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 ARPC5O15511 151 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 HIST1H1EP10412 219 aaKnown RBP7.34□□□□□ -1.23
UPF2-202ENST00000357604 NDUFA5Q16718 116 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 PUSL1Q8N0Z8 303 aaKnown RBP7.34□□□□□ -1.23
UPF2-202ENST00000357604 CADM3Q8N126 398 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 C11orf44Q8N8P7 122 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 RAX2Q96IS3 184 aa7.34□□□□□ -1.23
UPF2-202ENST00000357604 LINC00473A8K010 186 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 CLEC3BP05452 202 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 RND2P52198 227 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 POLR2GP62487 172 aaKnown RBP eCLIP7.33□□□□□ -1.24
UPF2-202ENST00000357604 FCN2Q15485 313 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 C2orf83Q53S99 150 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 C17orf50Q8WW18 174 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 DEDDO75618 318 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 NDUFA3O95167 84 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 ZNF134P52741 427 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 LRTM2Q8N967 370 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 OR51G1Q8NGK1 321 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 OR4X1Q8NH49 305 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 WFDC12Q8WWY7 111 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 TMEM190Q8WZ59 177 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 ATP6V0BQ99437 205 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 TECRQ9NZ01 308 aaKnown RBP7.33□□□□□ -1.24
UPF2-202ENST00000357604 CACNA1GO43497 2377 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 LY6LH3BQJ8 138 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 C15orf32Q32M92 178 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 C11orf87Q6NUJ2 197 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 TCF23Q7RTU1 214 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 OR2K2Q8NGT1 345 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 IGHV3-21A0A0B4J1V1 117 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 PITX3O75364 302 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 TAGLN2P37802 199 aaKnown RBP7.33□□□□□ -1.24
UPF2-202ENST00000357604 NUTF2P61970 127 aaKnown RBP7.33□□□□□ -1.24
UPF2-202ENST00000357604 RPL30P62888 115 aaKnown RBP7.33□□□□□ -1.24
UPF2-202ENST00000357604 POU2AF1Q16633 256 aa7.33□□□□□ -1.24
UPF2-202ENST00000357604 AWAT1Q58HT5 328 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms