RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 COX19Q49B96 90 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 PRR31Q5SQ13 230 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 FAM120AOSQ5T036 256 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 GUSBP11Q6P575 273 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 Q6ZR03 302 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 VKORC1L1Q8N0U8 176 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 ZNF503Q96F45 646 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 URB1-AS1Q96HZ7 61 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 IGF2BP2-AS1Q96M15 143 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 HEYLQ9NQ87 328 aaPredicted RBP5.61□□□□□ -1.51
VPS39-202ENST00000348544 TNFRSF19Q9NS68 423 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 OCIAD1Q9NX40 245 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 CLEC5AQ9NY25 188 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 FRYLO94915 3013 aa5.61□□□□□ -1.51
VPS39-202ENST00000348544 HCFC1P51610 2035 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 LOC102724200A0A096LPH7 203 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 MUC21A0A0G2JKD1 596 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 MUC21A0A140T8X8 626 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PINLYPA6NC86 204 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 SH2D7A6NKC9 451 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 DEFB108AA8MXU0 73 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 HSBP1O75506 76 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 ACTL6BO94805 426 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 GATA2P23769 480 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 DUSP3P51452 185 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 RPL8P62917 257 aaKnown RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 AESQ08117 197 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 FOXF2Q12947 444 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 MUC21Q5SSG8 566 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 BVES-AS1Q5T3Y7 98 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 IBA57Q5T440 356 aaKnown RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 AMMECR1LQ6DCA0 310 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 OR4A47Q6IF82 309 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 NHLRC2Q8NBF2 726 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 SSBP3Q9BWW4 388 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 DOCK7Q96N67 2140 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 FRYQ5TBA9 3013 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 TMEM30CPA0ZSE6 113 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 IZUMO1RA6ND01 250 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 NUDT3O95989 172 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 HAND1O96004 215 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 GPR6P46095 362 aaPredicted RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 GABRA2P47869 451 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRR20EP86478 221 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRR20CP86479 221 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRR20DP86480 221 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRR20BP86481 221 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRR20AP86496 221 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PSG5Q15238 335 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 RNASEKQ6P5S7 137 aaKnown RBP5.6□□□□□ -1.51
VPS39-202ENST00000348544 LINC00173Q6ZV60 143 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 DEFB125Q8N687 156 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 ZC2HC1AQ96GY0 325 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 COQ2Q96H96 371 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 LINC00470Q9BZP3 86 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 SERTAD4Q9NUC0 356 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PSG11Q9UQ72 335 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 WASHC3Q9Y3C0 194 aa5.6□□□□□ -1.51
VPS39-202ENST00000348544 PRUNE2Q8WUY3 3088 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 FREM2Q5SZK8 3169 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 IGKV3D-15A0A087WSY6 115 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 hDV102S1A0JD36 115 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 KLF7O75840 302 aaPredicted RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 MT-CO2P00403 227 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 SP1P08047 785 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 MGST1P10620 155 aaKnown RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 IGFBP2P18065 325 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 NPY1RP25929 384 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 KLF5Q13887 457 aaPredicted RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 ALKBH6Q3KRA9 238 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 TIGITQ495A1 244 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 PRAMEF5Q5TYX0 476 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 PRAMEF6Q5VXH4 476 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 TUSC5Q8IXB3 177 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 TPRX1Q8N7U7 411 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 WDR31Q8NA23 367 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 SLC24A4Q8NFF2 622 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 OR52E5Q8NH55 327 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 ZNF596Q8TC21 504 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 WIPF2Q8TF74 440 aaPredicted RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 BCL2L2Q92843 193 aaPredicted RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 SSBP4Q9BWG4 385 aaPredicted RBP5.59□□□□□ -1.51
VPS39-202ENST00000348544 NPVFQ9HCQ7 196 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 IL19Q9UHD0 177 aa5.59□□□□□ -1.51
VPS39-202ENST00000348544 LY6G6EA0A0G2JKS1 128 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 OOEPA6NGQ2 149 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 OR4C46A6NHA9 309 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 C2CD4DB7Z1M9 353 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 TMEM238C9JI98 176 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 WNT9BO14905 357 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 FCGR3BO75015 233 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 CD46P15529 392 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 DUTP33316 252 aaKnown RBP5.59□□□□□ -1.52
VPS39-202ENST00000348544 PSG9Q00887 426 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 FOXE3Q13461 319 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 OR1C1Q15619 314 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 TEPPQ6URK8 271 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 Q8IYB0 196 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 RFESDQ8TAC1 157 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms