RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NPVFQ9HCQ7 196 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 TMEM167BQ9NRX6 74 aa13.14□□□□□ -0.31
HMGA1-202ENST00000347617 A0A096LPE4 126 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 A0A1W2PPZ6 126 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 A0A1W2PS18 150 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 DPRXA6NFQ7 191 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 NDUFB8O95169 186 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 CCL2P13500 99 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 CA6P23280 308 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 TFPI2P48307 235 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 THBS3P49746 956 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 PSG7Q13046 419 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 GCSAMLQ5JQS6 135 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 Q6ZT83 130 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 SPACA3Q8IXA5 215 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 SCCPDHQ8NBX0 429 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 C1orf162Q8NEQ5 155 aaPredicted RBP13.13□□□□□ -0.31
HMGA1-202ENST00000347617 MGST2Q99735 147 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 C12orf49Q9H741 205 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 PLSCR4Q9NRQ2 329 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 YTHDF2Q9Y5A9 579 aaKnown RBP13.13□□□□□ -0.31
HMGA1-202ENST00000347617 COX11Q9Y6N1 276 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 FREM1Q5H8C1 2179 aa13.13□□□□□ -0.31
HMGA1-202ENST00000347617 A0A1W2PN81 502 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 C12orf77C9JDV5 145 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 PRSS46E5RG02 174 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 K7ENP7 123 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 SLC17A3O00476 420 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 GNG4P50150 75 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 BRWD1-AS2P59051 145 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 STUMQ69YW2 141 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 INO80CQ6PI98 192 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 C5orf30Q96GV9 206 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 TRGV8A0A0C4DH27 118 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 MBD3L4A6NDZ8 208 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 MBD3L3A6NE82 208 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 MBD3L5A6NJ08 208 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 ISLRO14498 428 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 HAND1O96004 215 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 HBZP02008 142 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 KIR2DL2P43627 348 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 RBX1P62877 108 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 TIGITQ495A1 244 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 OR8I2Q8N0Y5 310 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 ZNF808Q8N4W9 903 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 OR4P4Q8NGL7 312 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 OR4A16Q8NH70 328 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 MBD3L2Q8NHZ7 208 aaPredicted RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 PRR7Q8TB68 274 aa13.12□□□□□ -0.31
HMGA1-202ENST00000347617 FAM103A1Q9BTL3 118 aaKnown RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 LSM4Q9Y4Z0 139 aaKnown RBP13.12□□□□□ -0.31
HMGA1-202ENST00000347617 MED12LQ86YW9 2145 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 IGHV2-26A0A0B4J1V2 119 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 DEFA4P12838 97 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 KIR2DS2P43631 304 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 VDAC2P45880 294 aaPredicted RBP13.11□□□□□ -0.31
HMGA1-202ENST00000347617 FAM162BQ5T6X4 162 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 C9orf135Q5VTT2 229 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 WIPF2Q8TF74 440 aaPredicted RBP13.11□□□□□ -0.31
HMGA1-202ENST00000347617 GSX1Q9H4S2 264 aaPredicted RBP13.11□□□□□ -0.31
HMGA1-202ENST00000347617 HES4Q9HCC6 221 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 HEYLQ9NQ87 328 aaPredicted RBP13.11□□□□□ -0.31
HMGA1-202ENST00000347617 IL19Q9UHD0 177 aa13.11□□□□□ -0.31
HMGA1-202ENST00000347617 IGHV1-69-2A0A0G2JMI3 117 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 HELTA6NFD8 242 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 ADH4P08319 380 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 C3orf79P0CE67 100 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 TSPOP30536 169 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 PLA2G5P39877 138 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 SELENOVP59797 346 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 ERVK-16P61578 105 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 MIC13Q5XKP0 118 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 C9orf106Q8NAJ2 232 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 ST6GALNAC3Q8NDV1 305 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 COMMD5Q9GZQ3 224 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 MS4A5Q9H3V2 200 aa13.1□□□□□ -0.31
HMGA1-202ENST00000347617 ZNF503-AS2A6NEH8 195 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 F2Z2F3 143 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 RRHO14718 337 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 CCL25O15444 150 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 SPINK2P20155 84 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 HNF1AP20823 631 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 IGHV1-2P23083 117 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 ZNF83P51522 516 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 UCNP55089 124 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 MRPL49Q13405 166 aaKnown RBP13.09□□□□□ -0.31
HMGA1-202ENST00000347617 EFNB3Q15768 340 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 PRAMEF5Q5TYX0 476 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 PRAMEF6Q5VXH4 476 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 TEPPQ6URK8 271 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 NIT1Q86X76 327 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 OR52L2PQ8NGH6 319 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 C19orf24Q9BVV8 132 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 CACNA1GO43497 2377 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 SMIM27A0A1W2PRY6 76 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 CA2P00918 260 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 PMCHP20382 165 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 RPS16P62249 146 aaKnown RBP13.09□□□□□ -0.31
HMGA1-202ENST00000347617 ZNF439Q8NDP4 499 aa13.09□□□□□ -0.31
HMGA1-202ENST00000347617 SLC24A4Q8NFF2 622 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms