RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 UBE2L5PA0A1B0GUS4 154 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 SLC38A11Q08AI6 406 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A2PQ658T7 463 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 TMEM200BQ69YZ2 307 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 LAX1Q8IWV1 398 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 OR11H2Q8NH07 326 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 C7orf33Q8WU49 177 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 CEP295Q9C0D2 2601 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 DOCK9Q9BZ29 2069 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 P0DMU3 169 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 FAM231AP0DMU4 169 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 FAM231CP0DMU5 169 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 SRSF2Q01130 221 aaKnown RBP6.9□□□□□ -1.31
HMGB1-203ENST00000341423 TEPPQ6URK8 271 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 GGNQ86UU5 652 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 SLC50A1Q9BRV3 221 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 TMEM140Q9NV12 185 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 MRPL27Q9P0M9 148 aaKnown RBP6.9□□□□□ -1.31
HMGB1-203ENST00000341423 SPRY2O43597 315 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 TNFRSF6BO95407 300 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 PMCHP20382 165 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 RHPN1-AS1Q9BWJ2 59 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 CSTL1Q9H114 145 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 CYB5R1Q9UHQ9 305 aa6.9□□□□□ -1.31
HMGB1-203ENST00000341423 IGHV1-3A0A0C4DH29 117 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 PPP1R17O96001 155 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 IGHV4-38-2P0DP08 117 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ASAH1Q13510 395 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 Q1RN00 199 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 SIGIRRQ6IA17 410 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 NFE4Q86UQ8 179 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 C2CD4CQ8TF44 421 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 FANCD2OSQ96PS1 177 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 KCNK15Q9H427 330 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 PXMP4Q9Y6I8 212 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ADAMTSL1Q8N6G6 1762 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 TRAV3A0A0B4J244 114 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 C5orf63A6NC05 138 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 LINC00869P0C866 280 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ASIPP42127 132 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 SPCS3P61009 180 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 CACNG7P62955 275 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 HGFACQ04756 655 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 FAM78BQ5VT40 261 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF645Q8N7E2 425 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ALKBH7Q9BT30 221 aaPredicted RBP6.89□□□□□ -1.31
HMGB1-203ENST00000341423 C1QTNF5Q9BXJ0 243 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 FAM212BQ9NTI7 297 aaPredicted RBP6.89□□□□□ -1.31
HMGB1-203ENST00000341423 EMCNQ9ULC0 261 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 C3orf85A0A1B0GTC6 90 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 SHISA9B4DS77 424 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 CD7P09564 240 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 VIRMAQ69YN4 1812 aaKnown RBP6.89□□□□□ -1.31
HMGB1-203ENST00000341423 GPHB5Q86YW7 130 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 SELENOHQ8IZQ5 122 aaKnown RBP6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ZFP82Q8N141 532 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 PRSS3P2Q8NHM4 247 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 CHD5Q8TDI0 1954 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 OR4C45A6NMZ5 311 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 C11orf94C9JXX5 98 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF439Q8NDP4 499 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 FAM213BQ8TBF2 198 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 TAF15Q92804 592 aaKnown RBP eCLIP6.89□□□□□ -1.31
HMGB1-203ENST00000341423 AK3Q9UIJ7 227 aa6.89□□□□□ -1.31
HMGB1-203ENST00000341423 PAX4O43316 350 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CDK1P06493 297 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 TGFBR1P36897 503 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 MITD1Q8WV92 249 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 RAB24Q969Q5 203 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 FAM210BQ96KR6 192 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 WIPF3A6NGB9 483 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 BUB1B-PAK6H3BSN5 160 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 IGLV2-23P01705 113 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 IGHV3-53P01767 116 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 AMY1AP04745 511 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF181Q2M3W8 571 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 SNAI3Q3KNW1 292 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 SH2D6Q7Z4S9 175 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CHAC2Q8WUX2 184 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 KIAA1217Q5T5P2 1943 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 PRR14LQ5THK1 2151 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 FREM3P0C091 2139 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 LGALS1P09382 135 aaKnown RBP6.88□□□□□ -1.31
HMGB1-203ENST00000341423 FGF9P31371 208 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-203ENST00000341423 HERVK_113P61574 105 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 LCN15Q6UWW0 184 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CLEC18BQ6UXF7 455 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 MESP1Q9BRJ9 268 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 HRH4Q9H3N8 390 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CCL28Q9NRJ3 127 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 TOMM7Q9P0U1 55 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 IGSF23A1L1A6 192 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CTSDP07339 412 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-203ENST00000341423 S100A11P31949 105 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 TAGLN2P37802 199 aaKnown RBP6.88□□□□□ -1.31
HMGB1-203ENST00000341423 CRYBA2P53672 197 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 C10orf126Q8N4M7 172 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 LRRC75AQ8NAA5 344 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 C1orf43Q9BWL3 253 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 SIGLEC9Q9Y336 463 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms