RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 OR11H7Q8NGC8 314 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 NCOR1P1Q9H4R4 102 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 NECAP1Q8NC96 275 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 OR4B1Q8NGF8 309 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 P01737 135 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 RHOGP84095 191 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 CD69Q07108 199 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 OR5AU1Q8NGC0 362 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 COL5A1P20908 1838 aaPredicted RBP8.37□□□□□ -1.07
USP54-201ENST00000339859 RNASEK-C17orf49H0YIS7 233 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 SEC11BP0C7V7 166 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 GPX4P36969 197 aaPredicted RBP8.37□□□□□ -1.07
USP54-201ENST00000339859 MEOX2P50222 304 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 RUSC1-AS1Q66K80 236 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 TEX38Q6PEX7 206 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 CACNG8Q8WXS5 425 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 HS3ST6Q96QI5 342 aa8.37□□□□□ -1.07
USP54-201ENST00000339859 TGOLN2O43493 480 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 Q6ZR03 302 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 ZNF524Q96C55 264 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 GALNT14Q96FL9 552 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 IGHV3OR16-12A0A075B7B8 117 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 RANP62826 216 aaKnown RBP8.36□□□□□ -1.07
USP54-201ENST00000339859 NHLH2Q02577 135 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 KIAA0141Q14154 515 aaPredicted RBP8.36□□□□□ -1.07
USP54-201ENST00000339859 TEX261Q6UWH6 196 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 ASCL4Q6XD76 172 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 PRNTQ86SH4 94 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 PLSCR3Q9NRY6 295 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 VAX2Q9UIW0 290 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 C7orf66A4D0T2 115 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 FAM157CP0CG43 387 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 NAT1P18440 290 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 FAM103A1Q9BTL3 118 aaKnown RBP8.36□□□□□ -1.07
USP54-201ENST00000339859 CTDSP1Q9GZU7 261 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 ATP6V0CP27449 155 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 NDUFA6P56556 154 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 TUSC1Q2TAM9 212 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 TAF15Q92804 592 aaKnown RBP eCLIP8.36□□□□□ -1.07
USP54-201ENST00000339859 SVILO95425 2214 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 NTF4P34130 210 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 MIC13Q5XKP0 118 aa8.36□□□□□ -1.07
USP54-201ENST00000339859 IGHV2-5P01817 119 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 PQLC2Q6ZP29 291 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 ZNF680Q8NEM1 530 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 OR51M1Q9H341 326 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 RBFOX3A6NFN3 312 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 SMAGPQ0VAQ4 97 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 EP300Q09472 2414 aaPredicted RBP8.35□□□□□ -1.07
USP54-201ENST00000339859 FAM223BA6NKX1 122 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 C8orf88P0DMB2 117 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 PVRIGQ6DKI7 326 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 FAM223AQ8IWN6 122 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 COQ2Q96H96 371 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 RTBDNQ9BSG5 229 aaPredicted RBP8.35□□□□□ -1.07
USP54-201ENST00000339859 OR5AC2Q9NZP5 309 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 RGS13O14921 159 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 SFTA3P0C7M3 94 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 C5orf17Q8NAS9 161 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 OR10C1Q96KK4 312 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 NEURL2Q9BR09 285 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 OR2T8A6NH00 312 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 H0YJW9 148 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 CXCL3P19876 107 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 Q71RC1 249 aaPredicted RBP8.35□□□□□ -1.07
USP54-201ENST00000339859 LRRC75A-AS1Q8N1F1 130 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 USMG5Q96IX5 58 aa8.35□□□□□ -1.07
USP54-201ENST00000339859 GGCTO75223 188 aaKnown RBP8.34□□□□□ -1.07
USP54-201ENST00000339859 FAM74A3Q4VXF1 159 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 GFI1Q99684 422 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 NAT8Q9UHE5 227 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 IGKV1D-13A0A0B4J2D9 117 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 ITGB1BP1O14713 200 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 CD5P06127 495 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 IGKV1-13P0DP09 117 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 C5orf64Q2M2E5 130 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 C11orf44Q8N8P7 122 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 F8VVB4 439 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 F8VWA3 439 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 PAGE4O60829 102 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 CD8AP01732 235 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 PRCDQ00LT1 54 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 RIGQ13278 110 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 SEM1Q6ZVN7 128 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 S4R3C0 116 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 PRSS8Q16651 343 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 G3V3Q6 166 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 SAP30O75446 220 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 IGHV2-70P01814 119 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 ZNF600Q6ZNG1 722 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 AP1S3Q96PC3 154 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 SLC35B3Q9H1N7 401 aa8.34□□□□□ -1.07
USP54-201ENST00000339859 OR4C46A6NHA9 309 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 RNF166Q96A37 237 aaPredicted RBP8.33□□□□□ -1.08
USP54-201ENST00000339859 C18orf12Q96KH6 178 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 URGCP-MRPS24S4R325 110 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 TRBV7-1A0A0A6YYK4 115 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 ZNF705FA8MVS1 300 aaPredicted RBP8.33□□□□□ -1.08
USP54-201ENST00000339859 NAPSAO96009 420 aa8.33□□□□□ -1.08
USP54-201ENST00000339859 ZNF705DP0CH99 300 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms